Commits for wong
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v263_base to v264_preview (2012-02-14 to 2012-02-21) v264
- md5sums for open chrom dnase
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 113, context: html, text, full: html, text
- changed it to complain and die upon subId setting to reviewing failure
- src/hg/encode/encodeQaInit/encodeQaInit - lines changed 10, context: html, text, full: html, text
- some merge problem needs this
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 9, context: html, text, full: html, text
- more lab found errors
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 9, context: html, text, full: html, text
- added in provisional views for haib Bisulfite
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibBisulfate.ra - lines changed 115, context: html, text, full: html, text
- added in the rest of the bisulfate test track
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.html - lines changed 125, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.ra - lines changed 84, context: html, text, full: html, text
- forgot alpha tag
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- flo's version of haib bisulfate
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibBisulfate.html - lines changed 74, context: html, text, full: html, text
- more fake stanzas
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibBisulfate.ra - lines changed 157, context: html, text, full: html, text
- I have no idea how that one got commented out
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 42, context: html, text, full: html, text
- for the merge
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
- removing temporary provisional views
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 16, context: html, text, full: html, text
- corrected notes, last time was premature
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release3.notes - lines changed 30, context: html, text, full: html, text
- fixed tense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 1, context: html, text, full: html, text
- pre-qa fixes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html - lines changed 3, context: html, text, full: html, text
- pre=qa fixes and reformed references
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html - lines changed 41, context: html, text, full: html, text
- renaming some files before they are released
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 8, context: html, text, full: html, text
- reverted a metaDB change, becuase hte objects already went out in release 1
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 9, context: html, text, full: html, text
- changing tag to conform to norm
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- renamed objects to now have antibody vendor id
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 191, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 64, context: html, text, full: html, text
- added in FoxM1 experiment
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 183, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 45, context: html, text, full: html, text
- the threading of the md5sums was causing problems with the database objects not being able to be clones, so i dosconnect fom the database, then reconnect after making the md5sums
- src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 2, context: html, text, full: html, text
- added in md5sums
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 17, context: html, text, full: html, text
- updated notes again
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release2.notes - lines changed 135, context: html, text, full: html, text
- forgot to also remove revoked tables from the change table status set, possibly need to remove attic, but i'll do it if the problem comes up
- python/lib/ucscgenomics/mkChangeNotes.py - lines changed 1, context: html, text, full: html, text
- fixed html and order of cells in list
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 1, context: html, text, full: html, text
- changed view limit according to lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 1, context: html, text, full: html, text
- expIds for haib
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 37, context: html, text, full: html, text
- expIds and other mdb fixes
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 271, context: html, text, full: html, text
- more metadata corrections
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 3, context: html, text, full: html, text
- added in antibody target to the decsription field (Willy)
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 95, context: html, text, full: html, text
- changed the gzip md5sum function to check internally for the contents, but report the external md5sum to the metaDb
- src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 70, context: html, text, full: html, text
- changed filter to all for treatment
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 1, context: html, text, full: html, text
- fixed alphabetization
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 2, context: html, text, full: html, text
- this time for real on alphabetize
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 1, context: html, text, full: html, text
- fixed internal gzip md5sum
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 627, context: html, text, full: html, text
- fixed capitalization
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.ra - lines changed 1, context: html, text, full: html, text
- more internal gzip bug fixes
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 145, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 1076, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 409, context: html, text, full: html, text
- correcting for the gzip bug error in mkFilesList
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 687, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 98, context: html, text, full: html, text
- changed short labels according to lab
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 47, context: html, text, full: html, text
- expIds and accessions for rna seq
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibRnaSeq.ra - lines changed 21, context: html, text, full: html, text
- changed it to show the server and foldername onthe same line
- src/hg/encode/encodeQaCheckHgdownloadFiles/encodeQaCheckHgdownloadFiles - lines changed 2, context: html, text, full: html, text
- correcting some errors
- src/hg/utils/automation/HgDb.pm - lines changed 2, context: html, text, full: html, text
- removed line that was left from debugging
- src/hg/utils/automation/HgDb.pm - lines changed 1, context: html, text, full: html, text
- uncomment parser line, and reomved Test \d: from test names
- src/hg/encode/qaEncodeTracks2/qaEncodeTracks - lines changed 8, context: html, text, full: html, text
- changed the reporting of changed tables state to be a critical error
- python/lib/ucscgenomics/mkChangeNotes.py - lines changed 17, context: html, text, full: html, text
- first draft of qaAddTrackReferences
- src/hg/encode/qaAddTrackReferences/makefile - lines changed 28, context: html, text, full: html, text
- src/hg/encode/qaAddTrackReferences/qaAddTrackReferences - lines changed 423, context: html, text, full: html, text
- removed unnecessary lines
- src/hg/encode/qaAddTrackReferences/qaAddTrackReferences - lines changed 60, context: html, text, full: html, text
- changed how collective name is put in the author list. It's always put at the front now.
- src/hg/encode/qaAddTrackReferences/qaAddTrackReferences - lines changed 17, context: html, text, full: html, text
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