All File Changes
v267_base to v268_preview (2012-05-15 to 2012-05-22) v268
- python/lib/ucscGb/encode/mkChangeNotes.py
- lines changed 2, context: html, text, full: html, text
fixing for source tree restructure
- src/hg/encode/DAFs/3.0/hg19/wgEncodeCshlLongRnaSeq.daf
- lines changed 2, context: html, text, full: html, text
removing raw from view name
- src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes
- lines changed 1, context: html, text, full: html, text
fixing for source tree restructure
- src/hg/encode/encodeQaInit/encodeQaInit
- lines changed 4, context: html, text, full: html, text
fixing for source tree restructure
- src/hg/encode/raDiff/raDiff
- lines changed 1, context: html, text, full: html, text
changed over to new library
- lines changed 5, context: html, text, full: html, text
fixing for source tree restructure
- src/hg/encode/raMerge/raMerge
- lines changed 3, context: html, text, full: html, text
fixing for source tree restructure
- src/hg/hgLogin/hgLogin.c
- lines changed 3, context: html, text, full: html, text
Use safecpy when there are no format args for safef, to avoid stricter gcc compile warnings on Ubuntu.
- lines changed 55, context: html, text, full: html, text
hgLogin.c will not compile with openssl lib. See http://redmine.soe.ucsc.edu/issues/7824#note-6 for more detail.
- lines changed 11, context: html, text, full: html, text
Polish signup mail text.
- lines changed 10, context: html, text, full: html, text
Changed sed user name mail text.
- lines changed 7, context: html, text, full: html, text
Removed commented out code and corrected indent errors based on Code Review #7932 feedback from Brian.
- lines changed 22, context: html, text, full: html, text
Merge branch 'master' into chinhli-hgLogin-final
- src/hg/hgLogin/makefile
- lines changed 1, context: html, text, full: html, text
Remove -lcrypt -lssl from -L flag, See redmine 7955 and 7824 for more details
- src/hg/hgSession/hgSession.c
- lines changed 4, context: html, text, full: html, text
Removed commented out code and corrected indent errors based on Code Review #7932 feedback from Brian.
- src/hg/hgTracks/bigBedTrack.c
- lines changed 1, context: html, text, full: html, text
show bigBed items in color when in dense (really fix #7272)
- src/hg/hgTracks/hgTracks.h
- lines changed 1, context: html, text, full: html, text
menuBar => printMenuBar to fix name collision with some new code
- src/hg/hgVarAnnogrator/hgVarAnnogrator.c
- lines changed 7, context: html, text, full: html, text
Added a warning note (research use only) before the Go button inthe variant annotation integrator (#6152), per Jim's suggestion.
- lines changed 10, context: html, text, full: html, text
Moving hgVarAnnogrator's warning note to after the "Go" button per Jim's request. (#6152)
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html
- lines changed 10, context: html, text, full: html, text
Response to QA of redmine 7972. 1. Make Experiment Summary the first link off ENCODE portal for Mouse as with Human 2. Have links in help message refer to human or mouse as appropriate
- src/hg/htdocs/ENCODE/index.html
- lines changed 1, context: html, text, full: html, text
Response to QA of redmine 7972. 1. Make Experiment Summary the first link off ENCODE portal for Mouse as with Human 2. Have links in help message refer to human or mouse as appropriate
- src/hg/htdocs/FAQ/FAQreleases.html
- lines changed 43, context: html, text, full: html, text
HTML cleanup. Axed nonsense attributes, comments, etc. Fixed one major bug where a </tr> was writen as <tr>.
- src/hg/htdocs/admin/jk-install.html
- lines changed 121, context: html, text, full: html, text
In mirror.html, replaced link to jk-install with link to source tree. Edited jk-install to point to source tree. (redmine #2511)
- src/hg/htdocs/admin/mirror.html
- lines changed 12, context: html, text, full: html, text
Added a note about new versions of MySQL disabling LOAD DATA LOCAL INFILE (redmine 7423)
- lines changed 2, context: html, text, full: html, text
In mirror.html, replaced link to jk-install with link to source tree. Edited jk-install to point to source tree. (redmine #2511)
- lines changed 1, context: html, text, full: html, text
Made change in wording suggested by Larry (redmine #7423)
- src/hg/htdocs/goldenPath/credits.html
- lines changed 730, context: html, text, full: html, text
Cleaned up lots of html. Bag tags, nonsense attributes, etc. Added Fugu fr3 Credit. (sorry to put in the same commit)
- lines changed 63, context: html, text, full: html, text
added naked mole-rat credits
- src/hg/htdocs/goldenPath/help/bedgraph.html
- lines changed 10, context: html, text, full: html, text
Changed the coordinates in the example since they fell outside the range of chromosome 19 on hg19
- src/hg/htdocs/goldenPath/help/hgSessionHelp.html
- lines changed 1, context: html, text, full: html, text
Changed the part that said sessions are not shared by default. By default, they *are* shared.
- src/hg/htdocs/goldenPath/help/oligoMatch.html
- lines changed 2, context: html, text, full: html, text
Added line saying that IUPAC ambiguity codes may be used. Redmine #7913.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.css
- lines changed 44, context: html, text, full: html, text
Initial check-in of trackDb settings documentation
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
- lines changed 4090, context: html, text, full: html, text
Initial check-in of trackDb settings documentation
- lines changed 32, context: html, text, full: html, text
A bit better commenting and some work on the self-assembling toc.
- lines changed 503, context: html, text, full: html, text
A bit more cleanup of the rejected settings tables before inviting feedback.
- lines changed 340, context: html, text, full: html, text
Fixed a lot of anchor tags unclosed. Needed to allow TOC self-assembly to find hidden settings. This should work now, and the self-assembled TOC should prove almost as good as my manual one.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.js
- lines changed 370, context: html, text, full: html, text
Initial check-in of trackDb settings documentation
- lines changed 71, context: html, text, full: html, text
A bit better commenting and some work on the self-assembling toc.
- lines changed 17, context: html, text, full: html, text
Fixed a lot of anchor tags unclosed. Needed to allow TOC self-assembly to find hidden settings. This should work now, and the self-assembled TOC should prove almost as good as my manual one.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
- lines changed 4213, context: html, text, full: html, text
Initial check-in of trackDb settings documentation
- src/hg/htdocs/goldenPath/help/trackDb/trackDbTestBlurbs.html
- lines changed 41, context: html, text, full: html, text
Initial check-in of trackDb settings documentation
- src/hg/htdocs/goldenPath/help/wiggle.html
- lines changed 18, context: html, text, full: html, text
Added a line specifying that fixedStep tracks must keep the same step size. Also fixed the example because it falls outside the range of hg19 chromosome 19. (redmine #7707)
- lines changed 29, context: html, text, full: html, text
Added new track options and descriptions (redmine #6866)
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 33, context: html, text, full: html, text
updated name attribute for hetGla1 announcement
- lines changed 26, context: html, text, full: html, text
Added Fugu fr3 announcement. Added missing date to previous headline.
- lines changed 1, context: html, text, full: html, text
made correction to hetGla1 announcement
- src/hg/htdocs/images/home_icon_sprite_white.png
- lines changed 0, context: html, text, full: html, text
Adding image needed for new top glabal navigation menu.
- src/hg/htdocs/images/plusesign-main-menu.png
- lines changed 0, context: html, text, full: html, text
Added new plus sign image for use with new global nav menus.
- src/hg/htdocs/inc/global-nav-bar.inc
- lines changed 106, context: html, text, full: html, text
New html for global navigation bar.
- src/hg/htdocs/indexNews.html
- lines changed 76, context: html, text, full: html, text
changed release date for hetGla1
- lines changed 24, context: html, text, full: html, text
Added Fugu fr3 accouncement. Correct one word in previous title.
- lines changed 1, context: html, text, full: html, text
made a correction to hetGla1 announcement
- src/hg/htdocs/style/makefile
- src/hg/htdocs/style/nice_menu.css
- lines changed 429, context: html, text, full: html, text
CSS needed for new dropdown menus. Some redundant code from Jabico, will need cleanup.
- lines changed 2, context: html, text, full: html, text
Changed path for two images to kent src dirs.
- lines changed 1, context: html, text, full: html, text
Fixed a line-height issue conflict with HGStyle.css. Needed to vertically align middle menu text.
- src/hg/inc/encode/wgEncodeGencodePdb.h
- lines changed 1, context: html, text, full: html, text
fixed typo in table description
- src/hg/inc/hgFindSpec.h
- lines changed 1, context: html, text, full: html, text
merge-and-squash dev branch hgFindSpecReleaseTag
- src/hg/inc/jsHelper.h
- lines changed 17, context: html, text, full: html, text
add jsonStringEscape; make .h header comments match .c file
- src/hg/js/hgVarAnnogrator.js
- lines changed 91, context: html, text, full: html, text
Fixed most jslint warnings - thanks Kate! (#6152)
- src/hg/js/jquery.plugins.js
- lines changed 492, context: html, text, full: html, text
Javascript needed for new global navigation menus with drop downs. Can also serve as a single plave to put all JQuery plugin code.
- src/hg/js/jquery.validate.min.js
- lines changed 51, context: html, text, full: html, text
Adding validation plugin for client side form validation of new login screens.
- src/hg/js/makefile
- lines changed 2, context: html, text, full: html, text
Added jquery.validate.min.js
- src/hg/lib/bbiChroms.as
- lines changed 6, context: html, text, full: html, text
Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
- src/hg/lib/bbiChroms.sql
- lines changed 12, context: html, text, full: html, text
Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
- src/hg/lib/encode/wgEncodeGencodeExonSupport.sql
- src/hg/lib/encode/wgEncodeGencodePdb.as
- lines changed 1, context: html, text, full: html, text
fixed typo in table description
- src/hg/lib/encode/wgEncodeGencodePdb.sql
- lines changed 1, context: html, text, full: html, text
fixed typo in table description
- src/hg/lib/gpFx.c
- lines changed 60, context: html, text, full: html, text
support for additional indel types in gpFx (#6152)
- src/hg/lib/hgFindSpecCustom.c
- lines changed 14, context: html, text, full: html, text
merge-and-squash dev branch hgFindSpecReleaseTag
- src/hg/lib/itemDetailsHtml.sql
- lines changed 1, context: html, text, full: html, text
allow multiple entries for an given item name
- src/hg/lib/jsHelper.c
- lines changed 60, context: html, text, full: html, text
add jsonStringEscape; make .h header comments match .c file
- src/hg/lib/tests/annoGratorTester.c
- lines changed 17, context: html, text, full: html, text
support for additional indel types in gpFx (#6152)
- src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToGpFx.txt
- lines changed 12, context: html, text, full: html, text
support for additional indel types in gpFx (#6152)
- src/hg/lib/trackDbCustom.c
- lines changed 1, context: html, text, full: html, text
Prevent warning message about lack of special type support for views when type is gvf. (for #34)
- src/hg/lib/variant.c
- lines changed 14, context: html, text, full: html, text
support for additional indel types in gpFx (#6152)
- src/hg/lib/wikiLink.c
- lines changed 4, context: html, text, full: html, text
hgLogin.c will not compile with openssl lib. See http://redmine.soe.ucsc.edu/issues/7824#note-6 for more detail.
- src/hg/makeDb/doc/bosTau7.txt
- lines changed 44, context: html, text, full: html, text
Finished liftOver, N50 number tasks. Updating description html.
- lines changed 12, context: html, text, full: html, text
Finished N50 number tasks. Updating description html.
- src/hg/makeDb/doc/encodeDccHg19/gencodeV12.txt
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeSydhTfbs.release3.notes
- src/hg/makeDb/doc/hg18.txt
- lines changed 79, context: html, text, full: html, text
Track #34: Updating hg18 too.
- src/hg/makeDb/doc/hg19.txt
- lines changed 6, context: html, text, full: html, text
Updated the contents of the hgnc table
- lines changed 38, context: html, text, full: html, text
Track #7964 (1000 Genomes Phase 1 Variant Calls) - grabbed VCF fromNCBI using Aspera (ascp) -- 142GB!
- lines changed 31, context: html, text, full: html, text
Track #34 (dbVar): data update from John Lopez at NCBI.
- lines changed 47, context: html, text, full: html, text
Track #34 (dbVar for human): added new dataset (nstd45, ISCA Curated).
- src/hg/makeDb/genbank/doc/initial-load.html
- lines changed 6, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/align-genbank
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/build-genbank
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/build.crontab
- lines changed 19, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/ccds-import
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/hgdownload-copy
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/hgnfs1-copy
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/hgwdev-dbload
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/hgwdev.crontab
- lines changed 16, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/etc/mkdownload
- lines changed 2, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/makefile
- lines changed 2, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/align/gbAlignSetup
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- lines changed 1, context: html, text, full: html, text
work around #! file path size limit
- src/hg/makeDb/genbank/src/align/gbAlignStep
- lines changed 1, context: html, text, full: html, text
removed outdate /cluster/genbank reference
- src/hg/makeDb/genbank/src/align/gbPython
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/ccds/README
- lines changed 3, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/dbload/gbDbLoadStep
- lines changed 5, context: html, text, full: html, text
remove temporary files as we go
- lines changed 3, context: html, text, full: html, text
oops, fix error in last commit. Need to pass $keep into dbLoad function
- src/hg/makeDb/genbank/src/extFileUpdate/extFileTool
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/lib/py/genbank/GbIndex.py
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/process/gbMkOrganismList
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- lines changed 1, context: html, text, full: html, text
work around #! file path size limit
- src/hg/makeDb/genbank/src/repair/extFileFindLost
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/src/repair/repairMgcOrfeome
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- lines changed 1, context: html, text, full: html, text
work around #! file path size limit
- src/hg/makeDb/genbank/tests/tools/getTblOverhead
- lines changed 3, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/tests/tools/modifyTablesTemplate
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/tests/tools/optimizeTables
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/genbank/tests/tools/updateCdnaInfoMolColumn
- lines changed 1, context: html, text, full: html, text
moved gbroot to /hive/data/outside/genbank
- src/hg/makeDb/hgFindSpec/hgFindSpec.c
- lines changed 104, context: html, text, full: html, text
merge-and-squash dev branch hgFindSpecReleaseTag
- src/hg/makeDb/trackDb/cow/bosTau7/description.html
- lines changed 91, context: html, text, full: html, text
Finished liftOver, N50 number tasks. Updating description html.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 1, context: html, text, full: html, text
fixed transcript genc v7 -> v10 tag error
- lines changed 54, context: html, text, full: html, text
added some of the BTOs for cell lines. I havent done everything yet though
- lines changed 14, context: html, text, full: html, text
adding in views plussig and minussig
- lines changed 2, context: html, text, full: html, text
Approved changes from beta to public. Also fixed some issues in alpha. Redmine #7931.
- lines changed 1, context: html, text, full: html, text
Fixed miss-spelled file name extension, found by weekly link checker.
- lines changed 5, context: html, text, full: html, text
Adjusting some labels in the CV
- lines changed 18, context: html, text, full: html, text
added more BTO terms to cell lines. still not done
- lines changed 7, context: html, text, full: html, text
Removed version stanza as this is not being used at the moment.
- lines changed 72, context: html, text, full: html, text
Adding termIds and termUrls to CV
- src/hg/makeDb/trackDb/cv/beta/cv.ra
- src/hg/makeDb/trackDb/cv/public/cv.ra
- lines changed 150, context: html, text, full: html, text
Approved changes from beta to public. Also fixed some issues in alpha. Redmine #7931.
- lines changed 1, context: html, text, full: html, text
Fixed broken link found by link checker.
- lines changed 1, context: html, text, full: html, text
Fixed miss-spelled file name extension, found by weekly link checker.
- src/hg/makeDb/trackDb/grcIncidentDb.html
- lines changed 4, context: html, text, full: html, text
Moved some periods outside the hyperlinks
- src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/ceuBcellRNASeq.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/fantomCageGraphTop.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.html
- lines changed 5, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeqRelease2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeqRelease3original.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
- lines changed 5, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMapRelease2.html
- lines changed 5, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html
- lines changed 5, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeqProv.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeqRelease1.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.html
- lines changed 5, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeSunyalbanyRnaGeneChip.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwAffyExonArray.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.new.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseqRelease2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleRNAseq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/burgeRnaSeqGemMapperAlign.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/ctgPos.html
- src/hg/makeDb/trackDb/human/hg19/gap.html
- src/hg/makeDb/trackDb/human/hg19/gold.html
- src/hg/makeDb/trackDb/human/hg19/knownGene.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- lines changed 217, context: html, text, full: html, text
fixed last donorId merge issue.
- lines changed 96, context: html, text, full: html, text
missing one in name only, and forgot ot add trackDb last time
- lines changed 223, context: html, text, full: html, text
changing all polyA pluses to dateunrestricted = 2012-05-14 if it was 05-16 or after
- lines changed 5, context: html, text, full: html, text
added in missing attic statements
- lines changed 775, context: html, text, full: html, text
correcting the plus/minus raw signals to no raw
- lines changed 17, context: html, text, full: html, text
more last second fixes. (attic items, label stuff)
- lines changed 45, context: html, text, full: html, text
added in last expIds and some objType corrections
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
- lines changed 926, context: html, text, full: html, text
lots of metaDb updates, almost all script generated
- lines changed 103, context: html, text, full: html, text
renamed monocytes and corrected metadata to not have donor id anymore. also removed some attic tracks from the trackDb
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
- lines changed 40, context: html, text, full: html, text
added md5sum's and meta-data for AWG.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
- lines changed 129, context: html, text, full: html, text
Added last submission for Histone track. Redmine #7510.
- lines changed 108, context: html, text, full: html, text
Fixed ordering of cells. Added expId, dccAccession and controlId. Also added md5sums. Redmine #7510.
- lines changed 4, context: html, text, full: html, text
Updated files based on remapping. Redmine #7510.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 135, context: html, text, full: html, text
Added submissions for tfbs track. Redmine #7827.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUchicagoTfbs.ra
- lines changed 111, context: html, text, full: html, text
added md5sum's and meta-data for AWG.
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUmassDekker5C.ra
- lines changed 5, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUw5C.ra
- lines changed 5, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 5, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- lines changed 2, context: html, text, full: html, text
Added alpha tag for release 3 of sydh tfbs track.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSc.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- lines changed 37, context: html, text, full: html, text
more last second fixes. (attic items, label stuff)
- lines changed 2, context: html, text, full: html, text
last second label and trackDb and html fixes before qa
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.ra
- lines changed 18, context: html, text, full: html, text
missing one in name only, and forgot ot add trackDb last time
- lines changed 154, context: html, text, full: html, text
took off non -needed defaults
- lines changed 41, context: html, text, full: html, text
more defaults and fixed some trackDb view settings
- lines changed 505, context: html, text, full: html, text
error in scriptRevert "fixed long labels"
This reverts commit 096150cca51933453918b37f6ae17981950905a3.
- lines changed 373, context: html, text, full: html, text
corrected labels for raw sig to sig
- lines changed 271, context: html, text, full: html, text
more last second fixes. (attic items, label stuff)
- lines changed 867, context: html, text, full: html, text
last second label and trackDb and html fixes before qa
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
- lines changed 789, context: html, text, full: html, text
lots of structural changes to trackDb to make it work, and corrected tag errors
- lines changed 0, context: html, text, full: html, text
getting rid of uneeded whitespace
- lines changed 130, context: html, text, full: html, text
renamed monocytes and corrected metadata to not have donor id anymore. also removed some attic tracks from the trackDb
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.release3.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeExonArraySuper.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencode.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.release2.ra
- lines changed 1, context: html, text, full: html, text
Setting the defualt to hide from dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html
- lines changed 5, context: html, text, full: html, text
documenting lifting chrM GENCODE annotations
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV3.ra
- lines changed 1, context: html, text, full: html, text
Setting the defualt to hide from dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.ra
- lines changed 1, context: html, text, full: html, text
Setting the defualt to hide from dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.release2.ra
- lines changed 1, context: html, text, full: html, text
Setting the defualt to hide from dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV9.ra
- lines changed 1, context: html, text, full: html, text
Setting the defualt to hide from dense
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- lines changed 6, context: html, text, full: html, text
Fixing typos and grammer found in QA review
- lines changed 3, context: html, text, full: html, text
Trying to clean up PET Cluster paragraph
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibShRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.release2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
- lines changed 6, context: html, text, full: html, text
Adding in the visibility defaults per katrina request
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release2.ra
- lines changed 4, context: html, text, full: html, text
Adding the allButton to the alpha release
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.html
- lines changed 4, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release3.html
- lines changed 4, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyRipSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSuper.release2.ra
- lines changed 1, context: html, text, full: html, text
Shortening the short label for GENCODE
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- lines changed 1, context: html, text, full: html, text
Updated long and short labels. Also updated track description about the new experiments found in this release. Redmine #7510.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.release3.ra
- lines changed 16, context: html, text, full: html, text
Added last submission for Histone track. Redmine #7510.
- lines changed 67, context: html, text, full: html, text
Updated long and short labels. Also updated track description about the new experiments found in this release. Redmine #7510.
- lines changed 6, context: html, text, full: html, text
Fixed ordering of cells. Added expId, dccAccession and controlId. Also added md5sums. Redmine #7510.
- lines changed 1, context: html, text, full: html, text
Updated files based on remapping. Redmine #7510.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release2.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.html
- lines changed 177, context: html, text, full: html, text
Added submissions for tfbs track. Redmine #7827.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra
- lines changed 19, context: html, text, full: html, text
Added submissions for tfbs track. Redmine #7827.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassDekker5C.html
- lines changed 2, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUmassDekker5C.ra
- lines changed 1, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.html
- lines changed 4, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch2.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra
- lines changed 3, context: html, text, full: html, text
Releasing patch for Uw5C & UmassDekker5C, redmine# 7245
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.html
- lines changed 1, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.html
- lines changed 4, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release4.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release5.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release4.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release2.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.release3.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/hg19Patch2/gap.html
- src/hg/makeDb/trackDb/human/hg19Patch2/gold.html
- src/hg/makeDb/trackDb/human/hgIkmc.html
- src/hg/makeDb/trackDb/human/ntModernHumans.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/ntSssSnps.html
- lines changed 4, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/ntSssTop5p.html
- lines changed 4, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/human/ntSssZScorePMVar.html
- lines changed 3, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/loadTracks
- lines changed 1, context: html, text, full: html, text
merge-and-squash dev branch hgFindSpecReleaseTag
- src/hg/makeDb/trackDb/moleRat/hetGla1/description.html
- lines changed 0, context: html, text, full: html, text
removed extra space next to mitochondrial link
- lines changed 1, context: html, text, full: html, text
Correct the N50 number (1603177).
- src/hg/makeDb/trackDb/mouse/komp.html
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 10, context: html, text, full: html, text
added accession numbers for mm9 Caltech RNA seq
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
- lines changed 89, context: html, text, full: html, text
added accession numbers back into LicrRnaSeq
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 6, context: html, text, full: html, text
set UCC accession of MEL/DMSO_2.0pct/Input/IgG-rat (wgEncodeEM002782) as the controlId of MEL, DMSO_2.0pct, IgG-rab sample, see note 57, redmine 5397
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhRnaSeq.ra
- lines changed 9, context: html, text, full: html, text
turn on alignment track, add html entry in top stanza
- lines changed 10, context: html, text, full: html, text
added html entry in top stanza, turned on alighment, signal track not displyed as no agreement was reached on how to display (Venkat), cleaned up labels
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.html
- src/hg/makeDb/trackDb/ntSeqContigs.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/makeDb/trackDb/ntSeqReads.html
- lines changed 2, context: html, text, full: html, text
Removed extra '../..' which was causing error messages in broken link reports
- src/hg/utils/automation/gvfToBed8Attrs.pl
- lines changed 39, context: html, text, full: html, text
Track #34 (dbVar for human): added new dataset (nstd45, ISCA Curated).
- src/hg/utils/automation/loadCosmic.pl
- lines changed 10, context: html, text, full: html, text
support gzipped data dump because COSMIC is now gzipping them
- src/product/README.mysql.setup
- lines changed 9, context: html, text, full: html, text
Added a note about new versions of MySQL disabling LOAD DATA LOCAL INFILE (redmine 7423)
- lines changed 1, context: html, text, full: html, text
Made change in wording suggested by Larry (redmine #7423)
- src/utils/qa/qaGbTracks
- lines changed 12, context: html, text, full: html, text
Got rid of most of the globals, except in the tableList processing.
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed: 23953
- files changed: 349