Commits for galt

v269_preview2 to v269_base (2012-06-19 to 2012-06-26) v269

• fixing out=sim4 to filter on minIdentity, and to reverse the output order of alignments
  • src/blat/version.doc - lines changed 1, context: html, text, full: html, text
  • src/inc/genoFind.h - lines changed 1, context: html, text, full: html, text
  • src/jkOwnLib/gfOut.c - lines changed 28, context: html, text, full: html, text
• making mysql like match on space, the word-boundary in the dbs field so db wont accidentally match another db of which it is a substring
  • src/hg/qaPushQ/qaPushQ.c - lines changed 18, context: html, text, full: html, text
• adding bottleneck delay to hgTracks
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
• fixing problem truncating bed lists after first element by restoring the comma
  • src/lib/linefile.c - lines changed 4, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 1, context: html, text, full: html, text
  • src/utils/bedToBigBed/itemRgb.as - lines changed 1, context: html, text, full: html, text
  • src/utils/bedToBigBed/makefile - lines changed 1, context: html, text, full: html, text