File Changes for hiram
switch to commits view, user indexv287_preview to v287_preview2 (2013-07-16 to 2013-07-23) v287
- src/hg/hgTracks/hgTracks.h
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checking in Robert's code refs #9741
- src/hg/hgTracks/joinedRmskTrack.c
- lines changed 1162, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/hgTracks/makefile
- lines changed 1, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/hgTracks/simpleTracks.c
- lines changed 2, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/inc/rmskAlign.h
- lines changed 77, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/inc/rmskJoined.h
- lines changed 70, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/inc/rmskOut2.h
- lines changed 105, context: html, text, full: html, text
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- src/hg/lib/makefile
- lines changed 1, context: html, text, full: html, text
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- src/hg/lib/rmskAlign.as
- lines changed 21, context: html, text, full: html, text
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- src/hg/lib/rmskAlign.c
- lines changed 209, context: html, text, full: html, text
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- src/hg/lib/rmskAlign.sql
- lines changed 27, context: html, text, full: html, text
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- src/hg/lib/rmskJoined.as
- lines changed 18, context: html, text, full: html, text
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- src/hg/lib/rmskJoined.c
- lines changed 218, context: html, text, full: html, text
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- src/hg/lib/rmskJoined.sql
- lines changed 24, context: html, text, full: html, text
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- src/hg/lib/rmskOut2.as
- lines changed 20, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/lib/rmskOut2.c
- lines changed 442, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/lib/rmskOut2.sql
- lines changed 26, context: html, text, full: html, text
checking in Robert's code refs #9741
- src/hg/makeDb/doc/gadMor1.txt
- lines changed 41, context: html, text, full: html, text
adding ucscToEnsembl table refs #11114
- src/hg/makeDb/doc/hg19.txt
- lines changed 44, context: html, text, full: html, text
finishing up lastz for panPan1 latCha1 jacJac1 capHir1 panHod1 hetGla2 refs #10272
- lines changed 21, context: html, text, full: html, text
finished lastz for jacJac1 panHod1 capHir1 hetGla2 refs #10272
- src/hg/makeDb/doc/mm10.txt
- lines changed 7, context: html, text, full: html, text
lastz for vicPac2 completed refs #10833
- src/hg/makeDb/doc/ochPri2.txt
- lines changed 21, context: html, text, full: html, text
liftOver to ochPri3 refs #9347
- src/hg/makeDb/doc/ochPri3.txt
- lines changed 13, context: html, text, full: html, text
finish off cpgIslands and genscan refs #9347
- src/hg/makeDb/doc/oviAri3.txt
- lines changed 8, context: html, text, full: html, text
finished pushQ entry refs #9409 pushQ 007056
- src/hg/makeDb/doc/panPan1.txt
- lines changed 75, context: html, text, full: html, text
completed genscan and cytoBandIdeo discovered broken contig JH650633 refs #8231
- src/hg/makeDb/doc/taeGut2.txt
- lines changed 122, context: html, text, full: html, text
ready for final steps to pushQ entry refs #10190
- src/hg/makeDb/doc/xenTro7.txt
- lines changed 30, context: html, text, full: html, text
done with genscan and genbank refs #9868
- src/hg/makeDb/trackDb/alpaca/vicPac2/trackDb.ra
- lines changed 21, context: html, text, full: html, text
setting default visibilities refs #10833
- src/hg/makeDb/trackDb/sheep/oviAri3/trackDb.ra
- lines changed 18, context: html, text, full: html, text
setting default visibilities refs #9409
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 1, context: html, text, full: html, text
adding joinedRmsk to allow maxWindowToDraw type refs #9741
- src/hg/makeDb/trackDb/trackDb.ra
- lines changed 23, context: html, text, full: html, text
removing extra blanks at the end of lines refs #10272
- src/hg/utils/automation/findEnsFtpNames.sh
- lines changed 3, context: html, text, full: html, text
tweaking the processing of the gtf FTP output refs #11114
- src/hg/utils/automation/unplacedScaffolds.pl
- lines changed 4, context: html, text, full: html, text
add twoBitDup checking refs #10272
- src/hg/utils/phyloTrees/primates.txt
- lines changed 7, context: html, text, full: html, text
adding macFas crab-eating macaque and chlSab green monkey refs #10272
- src/hg/utils/phyloTrees/vertebrates.txt
- lines changed 3, context: html, text, full: html, text
adding araMac Scarlet Macaw refs #10272
- src/userApps/README
- lines changed 1, context: html, text, full: html, text
the git fetch command now uses the beta branch not the HEAD refs #9149
- src/utils/ncbi/cytoBandVerify.pl
- lines changed 18, context: html, text, full: html, text
improve processing of the cytoBand.bed file refs #10290
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