All File Changes

v299_preview to v299_preview2 (2014-04-14 to 2014-04-21) v299

• src/hg/encode3/encodeDataWarehouse/edwRsyncEdwUser/edwRsyncEdwUser.c
  • lines changed 215, context: html, text, full: html, text
    Promote the "rsyncEdwUserTable" from oneShot task to be a regular edwapplication "edwRsyncEdwUser", and build it in ~bin/x86_64 directory as other
    edw applications like edwMakeValidFile, edwMakeEnrichments, etc.
    Remove the rsyncEdwUserTable directory from git source tree.
    
• src/hg/encode3/encodeDataWarehouse/edwRsyncEdwUser/makefile
  • lines changed 4, context: html, text, full: html, text
    Promote the "rsyncEdwUserTable" from oneShot task to be a regular edwapplication "edwRsyncEdwUser", and build it in ~bin/x86_64 directory as other
    edw applications like edwMakeValidFile, edwMakeEnrichments, etc.
    Remove the rsyncEdwUserTable directory from git source tree.
    
• src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c
  • lines changed 21, context: html, text, full: html, text
    Changes to EDW web programs to polish presentation and add nav bar
  • lines changed 1, context: html, text, full: html, text
    Adding Stanford styling and navbar to EDW web cgis. Stanford RM #1372
  • lines changed 15, context: html, text, full: html, text
    Add autorefresh of submission monitoring display
  • lines changed 3, context: html, text, full: html, text
    Code cleanup for EDW web UI improvements. Moved javascript tweaks for navigation bar and autorefresh to lib for sharing (and hiding)
  • lines changed 7, context: html, text, full: html, text
    ENCODE3 Specifications 1380Enforce the rule that non-admin user can not browse submissions made by other users.
    When user is not an administrator, the "Select whose files to browse:" drop down list
    in the edwWebBrowse UI will contains either
    1. the user's email address, the user had made some submissions previously, or
    2. a empty drop down list if there was no previous submission by the user.
    
• src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c
  • lines changed 4, context: html, text, full: html, text
    Adding Stanford styling and navbar to EDW web cgis. Stanford RM #1372
  • lines changed 5, context: html, text, full: html, text
    Merge branch 'master' into edwUi
    Conflicts:
    src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c
    
  • lines changed 1, context: html, text, full: html, text
    Remove superluous signout button
• src/hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c
  • lines changed 1, context: html, text, full: html, text
    Adding Stanford styling and navbar to EDW web cgis. Stanford RM #1372
  • lines changed 7, context: html, text, full: html, text
    Merge branch 'master' into edwUi
    Conflicts:
    src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c
    
• src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c
  • lines changed 20, context: html, text, full: html, text
    Begin adding styling (Stanford CSS) to edw web CGI's
  • lines changed 13, context: html, text, full: html, text
    Changes to EDW web programs to polish presentation and add nav bar
  • lines changed 1, context: html, text, full: html, text
    Adding Stanford styling and navbar to EDW web cgis. Stanford RM #1372
  • lines changed 3, context: html, text, full: html, text
    Remove menu update as it is now handled elsewhere
  • lines changed 28, context: html, text, full: html, text
    Add autorefresh of submission monitoring display
  • lines changed 13, context: html, text, full: html, text
    Make autorefresh work propertly with stop/restart of EDW submission
  • lines changed 4, context: html, text, full: html, text
    Code cleanup for EDW web UI improvements. Moved javascript tweaks for navigation bar and autorefresh to lib for sharing (and hiding)
  • lines changed 26, context: html, text, full: html, text
    ENCODE3 Specifications 1380:Only an administrator or the original submitter can re-submit
    the url or updates its submission information
    
• src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
  • lines changed 28, context: html, text, full: html, text
    Code cleanup for EDW web UI improvements. Moved javascript tweaks for navigation bar and autorefresh to lib for sharing (and hiding)
  • lines changed 3, context: html, text, full: html, text
    ENCODE3 Specifications 1380:Only an administrator or the original submitter can re-submit
    the url or updates its submission information
    
• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
  • lines changed 13, context: html, text, full: html, text
    Begin adding styling (Stanford CSS) to edw web CGI's
  • lines changed 3, context: html, text, full: html, text
    Changes to EDW web programs to polish presentation and add nav bar
  • lines changed 5, context: html, text, full: html, text
    Adding Stanford styling and navbar to EDW web cgis. Stanford RM #1372
  • lines changed 6, context: html, text, full: html, text
    Commit style sheets
  • lines changed 1, context: html, text, full: html, text
    Formaatting
  • lines changed 65, context: html, text, full: html, text
    Code cleanup for EDW web UI improvements. Moved javascript tweaks for navigation bar and autorefresh to lib for sharing (and hiding)
  • lines changed 10, context: html, text, full: html, text
    ENCODE3 Specifications 1380:Only an administrator or the original submitter can re-submit
    the url or updates its submission information
    
• src/hg/encode3/encodeDataWarehouse/makefile
  • lines changed 1, context: html, text, full: html, text
    Promote the "rsyncEdwUserTable" from oneShot task to be a regular edwapplication "edwRsyncEdwUser", and build it in ~bin/x86_64 directory as other
    edw applications like edwMakeValidFile, edwMakeEnrichments, etc.
    Remove the rsyncEdwUserTable directory from git source tree.
    
• src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwUserTable/makefile
  • lines changed 17, context: html, text, full: html, text
    Promote the "rsyncEdwUserTable" from oneShot task to be a regular edwapplication "edwRsyncEdwUser", and build it in ~bin/x86_64 directory as other
    edw applications like edwMakeValidFile, edwMakeEnrichments, etc.
    Remove the rsyncEdwUserTable directory from git source tree.
    
• src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwUserTable/rsyncEdwUserTable.c
  • lines changed 215, context: html, text, full: html, text
    Promote the "rsyncEdwUserTable" from oneShot task to be a regular edwapplication "edwRsyncEdwUser", and build it in ~bin/x86_64 directory as other
    edw applications like edwMakeValidFile, edwMakeEnrichments, etc.
    Remove the rsyncEdwUserTable directory from git source tree.
    
• src/hg/hgCustom/hgCustom.c
  • lines changed 3, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/hgTracks/mafTrack.c
  • lines changed 2, context: html, text, full: html, text
    fix off by one error that was having us starting to draw in the labelare in squish mode for multiz display.
    
• src/hg/hgTracks/multiWig.c
  • lines changed 87, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 22, context: html, text, full: html, text
    tweak autoscale on multiwigs to use the windowingFunction (min/max/mean)
  • lines changed 20, context: html, text, full: html, text
    stacked bars in multiwig working
• src/hg/hgTracks/snakeTrack.c
  • lines changed 7, context: html, text, full: html, text
    little tweak to deal with offscreen blocks
• src/hg/hgTracks/wigCommon.h
  • lines changed 7, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/hgTracks/wigTrack.c
  • lines changed 26, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 1, context: html, text, full: html, text
    take out a printf that got added by accident.
  • lines changed 15, context: html, text, full: html, text
    stacked bars in multiwig working
• src/hg/hgVai/hgVai.c
  • lines changed 11, context: html, text, full: html, text
    Suppress "Variant Identifiers" option if this assembly has no snp table. (Thanks Jonathan!)fixes #13085
    
• src/hg/hgc/hgc.c
  • lines changed 16, context: html, text, full: html, text
    Matt and Tim noticed that the ESP6500 VCF track details had twoprintCustomTrackUrl invocations. One was in genericClickHandlerPlus
    and it used an incorrect name (known issue with using pgSnp display
    code for VCF). The second was inside doVcfTabixDetails, using
    the correct name. I moved doVcfTabixDetails and doVcfDetails out
    of genericClickHandlerPlus; now doMiddle calls them, and they call
    genericHeader and printTrackHtml in a shared function.
    refs #9329
    
• src/hg/hgc/vcfClick.c
  • lines changed 56, context: html, text, full: html, text
    Matt and Tim noticed that the ESP6500 VCF track details had twoprintCustomTrackUrl invocations. One was in genericClickHandlerPlus
    and it used an incorrect name (known issue with using pgSnp display
    code for VCF). The second was inside doVcfTabixDetails, using
    the correct name. I moved doVcfTabixDetails and doVcfDetails out
    of genericClickHandlerPlus; now doMiddle calls them, and they call
    genericHeader and printTrackHtml in a shared function.
    refs #9329
    
  • lines changed 4, context: html, text, full: html, text
    Matt requested a change to vcf INFO table so that it was more readable.
• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 4, context: html, text, full: html, text
    Adding new AWG Segmentation to ENCODE downloads page refs# 12259
• src/hg/htdocs/ENCODE/index.html
  • lines changed 101, context: html, text, full: html, text
    Adding news items to ENCODE portal and news archive about new Motif feature and Segmentation track refs# 12259
• src/hg/htdocs/ENCODE/newsarch.html
  • lines changed 32, context: html, text, full: html, text
    Adding news items to ENCODE portal and news archive about new Motif feature and Segmentation track refs# 12259
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 14, context: html, text, full: html, text
    Adding entries for balAcu1 release, refs #12977
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 447, context: html, text, full: html, text
    Large changes to GBiB help doc, refs #12843
  • lines changed 41, context: html, text, full: html, text
    Making changes according to Luvina's feedback, refs #12843
  • lines changed 35, context: html, text, full: html, text
    Changes based on feedback from Ann and Luvina. Other formatting chaging including removal of extra whitespace. refs #12843
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 25, context: html, text, full: html, text
    Adding entries for balAcu1 release, refs #12977
  • lines changed 30, context: html, text, full: html, text
    Adding news about Genome Segmentations and Switch to TF ChIP-seq track with new Motifs refs # 12259
  • lines changed 3, context: html, text, full: html, text
    Removing links to AWG hub in news release as creates a unique issue with new TF ChIP-seq track Motifs refs # 12259
• src/hg/htdocs/inc/edwNavBar.html
  • lines changed 21, context: html, text, full: html, text
    Add navigation bar for ENCODE3 EDW web cgis
• src/hg/htdocs/indexNews.html
  • lines changed 150, context: html, text, full: html, text
    Adding entries for balAcu1 release, refs #12977
  • lines changed 80, context: html, text, full: html, text
    Adding news about Genome Segmentations and Switch to TF ChIP-seq track with new Motifs refs # 12259
  • lines changed 3, context: html, text, full: html, text
    Removing links to AWG hub in news release as creates a unique issue with new TF ChIP-seq track Motifs refs # 12259
• src/hg/htdocs/style/encode3.css
  • lines changed 8191, context: html, text, full: html, text
    Commit style sheets
  • lines changed 0, context: html, text, full: html, text
    Fix perms
• src/hg/htdocs/style/encode3Ucsc.css
  • lines changed 31, context: html, text, full: html, text
    Commit style sheets
  • lines changed 0, context: html, text, full: html, text
    Fix perms
• src/hg/htdocs/style/makefile
  • lines changed 2, context: html, text, full: html, text
    Add ENCODE3 CSS files for EDW web tools
• src/hg/inc/edwNavBar.html
  • lines changed 21, context: html, text, full: html, text
    Add Navigation bar for ENCODE3 EDW web tools
• src/hg/inc/hui.h
  • lines changed 14, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/inc/wiggle.h
  • lines changed 6, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/js/edwPersona.js
  • lines changed 7, context: html, text, full: html, text
    Navigation bar dynamics for EDW
  • lines changed 10, context: html, text, full: html, text
    Using jQuery for more concise code
• src/hg/lib/hui.c
  • lines changed 17, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/lib/pgSnp.c
  • lines changed 4, context: html, text, full: html, text
    When an insertion falls at the end of CDS, fetchCodons looks aheadto the next exon. However, when this happens in the last exon,
    there is no next exon so gene->chromStarts[i+1] is past the end
    of the array. Fix: make sure i+1 is a valid index before looking
    at the next exon.
    fixes #13089
    
• src/hg/lib/wiggleCart.c
  • lines changed 58, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/makeDb/doc/criGri1.txt
  • lines changed 2, context: html, text, full: html, text
    correction from code review refs #13067
  • lines changed 12, context: html, text, full: html, text
    setting blatServers refs #6506
• src/hg/makeDb/doc/eriEur2.txt
  • lines changed 16, context: html, text, full: html, text
    add genscan procedure refs #9149
• src/hg/makeDb/doc/mm10.txt
  • lines changed 24, context: html, text, full: html, text
    Loaded data for segmental duplications track. refs #12831
  • lines changed 152, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
• src/hg/makeDb/doc/quickAssembly.txt
  • lines changed 229, context: html, text, full: html, text
    rearrange order of db creation so that masking can go directly into the database refs #252
  • lines changed 28, context: html, text, full: html, text
    separate cpgIslands and cpgIslandsUnmasked build and add gc5Base refs #252
• src/hg/makeDb/doc/taeGut2.txt
  • lines changed 60, context: html, text, full: html, text
    finish up the build and in the pushQ refs #10190
  • lines changed 1, context: html, text, full: html, text
    readjuste default position refs #10190
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes14.csh
  • lines changed 7, context: html, text, full: html, text
    load the reciprocal blast tables on the other species
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added ochPri3 to daily hgwdev build refs #9347
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 17, context: html, text, full: html, text
    adding ochPri3 pika refs #9347
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 1, context: html, text, full: html, text
    Started calMil1 genbank updates on hgwbeta
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added ochPri3 to daily hgwdev build refs #9347
• src/hg/makeDb/genbank/src/copy/gbMakeDownload
  • lines changed 35, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 35, context: html, text, full: html, text
    back out a change I checked in by accident.
• src/hg/makeDb/genbank/src/lib/gbDefs.c
  • lines changed 2, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 2, context: html, text, full: html, text
    backing out some changes that got committed for no good reason
• src/hg/makeDb/genbank/src/process/gbParse.c
  • lines changed 1, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 1, context: html, text, full: html, text
    backing out some changes that got committed for no good reason
• src/hg/makeDb/hgLoadBed/tests/RunTest.sh
  • lines changed 1, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 1, context: html, text, full: html, text
    backing out some changes that got committed for no good reason
• src/hg/makeDb/schema/all.joiner
  • lines changed 9, context: html, text, full: html, text
    adding taeGut2 rules refs #10190
• src/hg/makeDb/trackDb/balAcu/balAcu1/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    Removing release tags per CR, refs #13071
• src/hg/makeDb/trackDb/calMil/calMil1/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync link to description page
• src/hg/makeDb/trackDb/criGri/criGri1/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync as recommended download method
• src/hg/makeDb/trackDb/drosophila/droMoj2/gap.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/geneid.html
  • lines changed 21, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/hedgehog/eriEur1/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync as recommended download method
• src/hg/makeDb/trackDb/hedgehog/eriEur2/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync as recommended download method
• src/hg/makeDb/trackDb/human/hg19/description.html
  • lines changed 5, context: html, text, full: html, text
    Added link to rsync instructions; edited formatting (redmine #11706)
• src/hg/makeDb/trackDb/human/hg19/evsEsp6500.html
  • lines changed 29, context: html, text, full: html, text
    Changing page to fit our details page conventions, refs #9329
  • lines changed 13, context: html, text, full: html, text
    Added a display conventions section as per QA request.
• src/hg/makeDb/trackDb/human/hg19/hinv70Composite.html
  • lines changed 83, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding public metaData and staging release of ENCODE AWG Segmentation release1 refs #12259
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeAwgSegmentation.ra
  • lines changed 186, context: html, text, full: html, text
    Adding public metaData and staging release of ENCODE AWG Segmentation release1 refs #12259
• src/hg/makeDb/trackDb/human/hg19/pseudoYale60.html
  • lines changed 39, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/human/hg19/trackDb.100way.ra
  • lines changed 1, context: html, text, full: html, text
    make 100way hide for now
  • lines changed 1, context: html, text, full: html, text
    Turning conservation track off by default until files are done pushing.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgSegmentation.html
  • lines changed 36, context: html, text, full: html, text
    Small changes to AWG Segmentation track description, Adding PMIDs to publications and Pol2 to encode vocab linkout refs #12259
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgSegmentation.ra
  • lines changed 1, context: html, text, full: html, text
    Removing extraneous columns from fileUi for ENCODE Seg track. QA Q5. refs #12259
  • lines changed 3, context: html, text, full: html, text
    Trim defaults
• src/hg/makeDb/trackDb/human/hg38/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync as the preferred download method (redmine #11706)
  • lines changed 6, context: html, text, full: html, text
    Changed description of analysis sets to better match NCBI's refs #11706
• src/hg/makeDb/trackDb/latCha/latCha1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/latCha/latCha1/gap.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/latCha/latCha1/gold.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/microbat/myoLuc2/description.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/mouse/mm10/description.html
  • lines changed 4, context: html, text, full: html, text
    Added link to rsync instructions; edited formatting (redmine #11706)
• src/hg/makeDb/trackDb/mouse/mm10/genomicSuperDups.html
  • lines changed 66, context: html, text, full: html, text
    Adding edits per contributor request. refs #12831
• src/hg/makeDb/trackDb/mouse/mm9/description.html
  • lines changed 3, context: html, text, full: html, text
    Added link to rsync instructions; edited formatting (redmine #11706)
• src/hg/makeDb/trackDb/mouse/mm9/pseudoYale60.html
  • lines changed 43, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/mouseLemur/micMur1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/mouseLemur/micMur1/gap.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/mouseLemur/micMur1/gold.html
  • lines changed 1, context: html, text, full: html, text
    Changing links on latCha1, micMur1, and myoLuc2 decription, gap, and gold pages.
• src/hg/makeDb/trackDb/rat/sgpGene.html
  • lines changed 16, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/sgpGene.html
  • lines changed 28, context: html, text, full: html, text
    Made html formatting, spelling and reference corrections
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/description.html
  • lines changed 2, context: html, text, full: html, text
    Added rsync as the preferred download method
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.chainNet.ra
  • lines changed 27, context: html, text, full: html, text
    readjust default track visibilities and order the chain net tracks refs #10190
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.ra
  • lines changed 15, context: html, text, full: html, text
    fix a crashing bug in hgCustom if the description field is empty on anassembly hub
    
  • lines changed 15, context: html, text, full: html, text
    readjust default track visibilities and order the chain net tracks refs #10190
• src/hg/utils/automation/doCpgIslands.pl
  • lines changed 11, context: html, text, full: html, text
    add option to name specific load table name refs #12977
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 2, context: html, text, full: html, text
    add reference to rsync download instructions refs #11706
• src/hg/visiGene/vgGetText/makefile
  • lines changed 2, context: html, text, full: html, text
    add more databases to vgGetText parsing
• src/lib/annoStreamVcf.c
  • lines changed 4, context: html, text, full: html, text
    There was one more place where I needed to prepend "chr" to a VCFsequence name when comparing to region chrom.
    fixes #13093
    
• src/lib/vcf.c
  • lines changed 24, context: html, text, full: html, text
    vcfNextRecord was using lineFileChop instead of lineFileChopTab,which masked a data bug in 1000 Genomes Phase 1 VCF: some lines have
    an extra tab character at the end. Now we chop by tabs, but ignore
    a single empty extra column because an extra tab at the end is a
    pretty common error.
    fixes #13091
    
• src/utils/methylateGenome/makefile
  • lines changed 3, context: html, text, full: html, text
    initial commit of methylateGenome tool
• src/utils/methylateGenome/methylateGenome.c
  • lines changed 69, context: html, text, full: html, text
    initial commit of methylateGenome tool

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