File Changes for kate

v301_preview to v301_preview2 (2014-05-26 to 2014-06-02) v301

• src/hg/hgTracks/encode.c
  • lines changed 1, context: html, text, full: html, text
    Show ENCODE peaks full height if no peak summit is shown. refs #13305
• src/hg/hgc/hgc.c
  • lines changed 30, context: html, text, full: html, text
    Add mapping of ids to names for extra fields. Reusing the extra fields code instead of adding track-specific code. refs #13230
  • lines changed 51, context: html, text, full: html, text
    Cleanup to isolate id/name mapping code. refs #13230
• src/hg/inc/bed5Sources.h
  • lines changed 82, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 82, context: html, text, full: html, text
    Removing unneeded file schema code. refs #13230
• src/hg/lib/bed5Sources.as
  • lines changed 12, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 3, context: html, text, full: html, text
    Trim field name for hgc extraFields cosmetics
• src/hg/lib/bed5Sources.c
  • lines changed 208, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 208, context: html, text, full: html, text
    Removing unneeded file schema code. refs #13230
• src/hg/lib/bed5Sources.sql
  • lines changed 19, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 1, context: html, text, full: html, text
    Removing unneeded file schema code. refs #13230
• src/hg/lib/wgEncodeAwgDnaseCombinedSources.as
  • lines changed 6, context: html, text, full: html, text
    Adding as file for source name table
  • lines changed 3, context: html, text, full: html, text
    Fix up schema for tableDescriptions
• src/hg/makeDb/doc/encodeAwgHg19.txt
  • lines changed 35, context: html, text, full: html, text
    Minor doc changes
  • lines changed 31, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 1, context: html, text, full: html, text
    Updating make doc.
• src/hg/makeDb/hgBedSources/hgBedSources.c
  • lines changed 138, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
• src/hg/makeDb/hgBedSources/makefile
  • lines changed 3, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
• src/hg/makeDb/hgBedSources/test.in.bed
  • lines changed 10, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
• src/hg/makeDb/hgBedSources/test.out.bed
  • lines changed 10, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwg.ra
  • lines changed 16, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 5, context: html, text, full: html, text
    Add settings to display ids as cell types with links. refs #13230
  • lines changed 1, context: html, text, full: html, text
    Label tweak for consistency.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseCombinedSites.html
  • lines changed 60, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 56, context: html, text, full: html, text
    Refine track description. refs #13230
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseMaster.html
  • lines changed 60, context: html, text, full: html, text
    Draft track description using text from Chromatin landscapes paper. refs #13230
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
  • lines changed 2, context: html, text, full: html, text
    Add settings to display ids as cell types with links. refs #13230
• src/test/buildTableDescriptions.pl
  • lines changed 5, context: html, text, full: html, text
    Adding header comment
  • lines changed 3, context: html, text, full: html, text
    Remove debug stuff