File Changes for angie

v316_preview to v316_preview2 (2015-04-27 to 2015-05-04) v316

• src/hg/hgIntegrator/hgIntegrator.c
  • lines changed 6, context: html, text, full: html, text
    Add descriptions to columns in Choose Fields popup.
    refs #14579
    
  • lines changed 2, context: html, text, full: html, text
    Change 'Annotation Integrator' to 'Data Integrator'. refs #14579
    
  • lines changed 301, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/hgTables/hgTables.h
  • lines changed 1, context: html, text, full: html, text
    Libifying hgTables' code that parses user's region input, so I can use
    it to add support for user regions to hgIntegrator.
    refs #14579
    
• src/hg/hgTables/userRegions.c
  • lines changed 171, context: html, text, full: html, text
    Libifying hgTables' code that parses user's region input, so I can use
    it to add support for user regions to hgIntegrator.
    refs #14579
    
• src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html
  • lines changed 4, context: html, text, full: html, text
    Change 'Annotation Integrator' to 'Data Integrator'. refs #14579
    
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    Add hgIntegrator to menuBar on hgwdev*, genome-test and genome-preview if it
    has been built into the current cgi-bin-*. Add hgIntegrator to top-level build.
    refs #14579
    
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    More styling for hgIntegrator: make Modal use same title style as
    regular Sections. refs #14579
    
  • lines changed 2, context: html, text, full: html, text
    Tweak our React Modal component's width to be a bit wider in most cases, and centered horizontally.
    
  • lines changed 11, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/inc/annoStreamDbFactorSource.h
  • lines changed 4, context: html, text, full: html, text
    Use the right autoSql for annoStreamDbFactorSource (with cellType and
    treatment columns) so those extra columns can be selected/deselected from output.
    refs #14579
    
• src/hg/inc/userRegions.h
  • lines changed 21, context: html, text, full: html, text
    Libifying hgTables' code that parses user's region input, so I can use
    it to add support for user regions to hgIntegrator.
    refs #14579
    
• src/hg/js/external/jquery.bifrost.1.0.1.min.js
  • lines changed 0, context: html, text, full: html, text
    Adding JQuery plugin Bifröst (https://github.com/matiasgagliano/bifrost) for ajax file uploading.
    Older browsers (IE 8 & 9) don't support FileReader; the trick is to submit the form with a hidden
    iframe as target, and get the response contents from that hidden iframe. No progress bar, but
    if we have to support IE 8 & 9, this appears to be the best way.
    
• src/hg/js/external/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding JQuery plugin Bifröst (https://github.com/matiasgagliano/bifrost) for ajax file uploading.
    Older browsers (IE 8 & 9) don't support FileReader; the trick is to submit the form with a hidden
    iframe as target, and get the response contents from that hidden iframe. No progress bar, but
    if we have to support IE 8 & 9, this appears to be the best way.
    
• src/hg/js/model/hgIntegrator/hgIntegratorModel.js
  • lines changed 11, context: html, text, full: html, text
    Add descriptions to columns in Choose Fields popup.
    refs #14579
    
  • lines changed 55, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/model/lib/ImModel.js
  • lines changed 10, context: html, text, full: html, text
    Before pushing to undoStack, make sure that the state actually changed;
    otherwise 'undo' would have no effect, kinda confusing.
    
  • lines changed 5, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/model/lib/UserRegionsMixin.js
  • lines changed 102, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/model/lib/cart.js
  • lines changed 4, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/model/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/react/hgIntegrator/hgIntegrator.jsx
  • lines changed 3, context: html, text, full: html, text
    More styling for hgIntegrator: make Modal use same title style as
    regular Sections. refs #14579
    
  • lines changed 5, context: html, text, full: html, text
    Add descriptions to columns in Choose Fields popup.
    refs #14579
    
  • lines changed 30, context: html, text, full: html, text
    Use table formatting for column descriptions in Choose fields popup.
    refs #14579
    
  • lines changed 2, context: html, text, full: html, text
    Change 'Annotation Integrator' to 'Data Integrator'. refs #14579
    
  • lines changed 53, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/react/lib/Modal.jsx
  • lines changed 9, context: html, text, full: html, text
    More styling for hgIntegrator: make Modal use same title style as
    regular Sections. refs #14579
    
• src/hg/js/react/lib/Section.jsx
  • lines changed 4, context: html, text, full: html, text
    More styling for hgIntegrator: make Modal use same title style as
    regular Sections. refs #14579
    
• src/hg/js/react/lib/TextArea.jsx
  • lines changed 60, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/react/lib/UserRegions.jsx
  • lines changed 169, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/react/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/js/react/react.mk
  • lines changed 2, context: html, text, full: html, text
    Remove all compiled/* files before running jsx because it may be fooled
    by timestamps when you're switching between branches.
    
  • lines changed 2, context: html, text, full: html, text
    Fixing overzealous clean target that broke the js/react install.
    
• src/hg/lib/annoStreamDbFactorSource.c
  • lines changed 4, context: html, text, full: html, text
    Bugfix: in absence of filters, data values were not copied over as intended.
    refs #11461, #14579
    
• src/hg/lib/hAnno.c
  • lines changed 7, context: html, text, full: html, text
    Fixing bug introduced in 45990976 that broke custom tracks in hgIntegrator.
    refs #14579
    
  • lines changed 4, context: html, text, full: html, text
    Use the right autoSql for annoStreamDbFactorSource (with cellType and
    treatment columns) so those extra columns can be selected/deselected from output.
    refs #14579
    
• src/hg/lib/jsHelper.c
  • lines changed 2, context: html, text, full: html, text
    Added support for pasted/uploaded user regions to hgIntegrator.
    Currently it's using hgTables' cart variables, so the two CGIs share
    user regions; adding regions in hgTables makes them available in
    hgIntegrator and vice versa.
    refs #14579
    
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Libifying hgTables' code that parses user's region input, so I can use
    it to add support for user regions to hgIntegrator.
    refs #14579
    
• src/hg/lib/userRegions.c
  • lines changed 202, context: html, text, full: html, text
    Libifying hgTables' code that parses user's region input, so I can use
    it to add support for user regions to hgIntegrator.
    refs #14579
    
• src/hg/lib/web.c
  • lines changed 9, context: html, text, full: html, text
    Add hgIntegrator to menuBar on hgwdev*, genome-test and genome-preview if it
    has been built into the current cgi-bin-*. Add hgIntegrator to top-level build.
    refs #14579
    
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    Add hgIntegrator to menuBar on hgwdev*, genome-test and genome-preview if it
    has been built into the current cgi-bin-*. Add hgIntegrator to top-level build.
    refs #14579