Commits for angie
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v316_preview to v316_preview2 (2015-04-27 to 2015-05-04) v316
- Bugfix: in absence of filters, data values were not copied over as intended.
refs #11461, #14579
- src/hg/lib/annoStreamDbFactorSource.c - lines changed 4, context: html, text, full: html, text
- Fixing bug introduced in 45990976 that broke custom tracks in hgIntegrator.
refs #14579
- More styling for hgIntegrator: make Modal use same title style as
regular Sections. refs #14579
- src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text
- src/hg/js/react/hgIntegrator/hgIntegrator.jsx - lines changed 3, context: html, text, full: html, text
- src/hg/js/react/lib/Modal.jsx - lines changed 9, context: html, text, full: html, text
- src/hg/js/react/lib/Section.jsx - lines changed 4, context: html, text, full: html, text
- Use the right autoSql for annoStreamDbFactorSource (with cellType and
treatment columns) so those extra columns can be selected/deselected from output.
refs #14579
- src/hg/inc/annoStreamDbFactorSource.h - lines changed 4, context: html, text, full: html, text
- Remove all compiled/* files before running jsx because it may be fooled
by timestamps when you're switching between branches.
- src/hg/js/react/react.mk - lines changed 2, context: html, text, full: html, text
- Tweak our React Modal component's width to be a bit wider in most cases, and centered horizontally.
- src/hg/htdocs/style/HGStyle.css - lines changed 2, context: html, text, full: html, text
- Add descriptions to columns in Choose Fields popup.
refs #14579
- src/hg/hgIntegrator/hgIntegrator.c - lines changed 6, context: html, text, full: html, text
- src/hg/js/model/hgIntegrator/hgIntegratorModel.js - lines changed 11, context: html, text, full: html, text
- src/hg/js/react/hgIntegrator/hgIntegrator.jsx - lines changed 5, context: html, text, full: html, text
- Use table formatting for column descriptions in Choose fields popup.
refs #14579
- src/hg/js/react/hgIntegrator/hgIntegrator.jsx - lines changed 30, context: html, text, full: html, text
- Add hgIntegrator to menuBar on hgwdev*, genome-test and genome-preview if it
has been built into the current cgi-bin-*. Add hgIntegrator to top-level build.
refs #14579
- src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text
- Change 'Annotation Integrator' to 'Data Integrator'. refs #14579
- src/hg/hgIntegrator/hgIntegrator.c - lines changed 2, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgIntegratorHelp.html - lines changed 4, context: html, text, full: html, text
- src/hg/js/react/hgIntegrator/hgIntegrator.jsx - lines changed 2, context: html, text, full: html, text
- Oops, meant to include this file in eb33ce4d. refs #14579
- Fixing overzealous clean target that broke the js/react install.
- src/hg/js/react/react.mk - lines changed 2, context: html, text, full: html, text
- Before pushing to undoStack, make sure that the state actually changed;
otherwise 'undo' would have no effect, kinda confusing.
- src/hg/js/model/lib/ImModel.js - lines changed 10, context: html, text, full: html, text
- Adding JQuery plugin Bifröst (https://github.com/matiasgagliano/bifrost) for ajax file uploading.
Older browsers (IE 8 & 9) don't support FileReader; the trick is to submit the form with a hidden
iframe as target, and get the response contents from that hidden iframe. No progress bar, but
if we have to support IE 8 & 9, this appears to be the best way.
- src/hg/js/external/jquery.bifrost.1.0.1.min.js - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- src/hg/js/external/makefile - lines changed 1, context: html, text, full: html, text
- Libifying hgTables' code that parses user's region input, so I can use
it to add support for user regions to hgIntegrator.
refs #14579
- src/hg/hgTables/hgTables.h - lines changed 1, context: html, text, full: html, text
- src/hg/hgTables/userRegions.c - lines changed 171, context: html, text, full: html, text
- src/hg/inc/userRegions.h - lines changed 21, context: html, text, full: html, text
- src/hg/lib/userRegions.c - lines changed 202, context: html, text, full: html, text
- Added support for pasted/uploaded user regions to hgIntegrator.
Currently it's using hgTables' cart variables, so the two CGIs share
user regions; adding regions in hgTables makes them available in
hgIntegrator and vice versa.
refs #14579
- src/hg/hgIntegrator/hgIntegrator.c - lines changed 301, context: html, text, full: html, text
- src/hg/htdocs/style/HGStyle.css - lines changed 11, context: html, text, full: html, text
- src/hg/js/model/hgIntegrator/hgIntegratorModel.js - lines changed 55, context: html, text, full: html, text
- src/hg/js/model/lib/ImModel.js - lines changed 5, context: html, text, full: html, text
- src/hg/js/model/lib/UserRegionsMixin.js - lines changed 102, context: html, text, full: html, text
- src/hg/js/model/lib/cart.js - lines changed 4, context: html, text, full: html, text
- src/hg/js/model/lib/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/js/react/hgIntegrator/hgIntegrator.jsx - lines changed 53, context: html, text, full: html, text
- src/hg/js/react/lib/TextArea.jsx - lines changed 60, context: html, text, full: html, text
- src/hg/js/react/lib/UserRegions.jsx - lines changed 169, context: html, text, full: html, text
- src/hg/js/react/lib/makefile - lines changed 1, context: html, text, full: html, text
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