Commits for hiram

v323_preview2 to v323_base (2015-09-28 to 2015-10-05) v323

• lastz runs per Ting lab requests refs #15476
  
  • src/hg/makeDb/doc/canFam3.txt - lines changed 65, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm9.txt - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/doc/rheMac3.txt - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/doc/rn4.txt - lines changed 125, context: html, text, full: html, text
• catching up with todays versions refs #16078
  
  • src/hg/utils/automation/genbank/rmskDescription.pl - lines changed 1, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/lib/bPlusTree.c - lines changed 2, context: html, text, full: html, text
  • src/lib/bbiRead.c - lines changed 4, context: html, text, full: html, text
  • src/lib/bigBed.c - lines changed 2, context: html, text, full: html, text
  • src/lib/cheapcgi.c - lines changed 3, context: html, text, full: html, text
  • src/lib/codebias.c - lines changed 2, context: html, text, full: html, text
  • src/lib/dnautil.c - lines changed 2, context: html, text, full: html, text
  • src/lib/fof.c - lines changed 2, context: html, text, full: html, text
  • src/lib/mime.c - lines changed 2, context: html, text, full: html, text
  • src/lib/net.c - lines changed 2, context: html, text, full: html, text
  • src/lib/nt4.c - lines changed 2, context: html, text, full: html, text
  • src/lib/options.c - lines changed 5, context: html, text, full: html, text
  • src/lib/pslGenoShow.c - lines changed 10, context: html, text, full: html, text
  • src/lib/pslShow.c - lines changed 10, context: html, text, full: html, text
  • src/lib/udc.c - lines changed 7, context: html, text, full: html, text
  • src/lib/wormdna.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/jkOwnLib/ffSeedExtend.c - lines changed 2, context: html, text, full: html, text
  • src/jkOwnLib/fuzzyFind.c - lines changed 2, context: html, text, full: html, text
  • src/jkOwnLib/gfBlatLib.c - lines changed 2, context: html, text, full: html, text
  • src/jkOwnLib/xenbig.c - lines changed 4, context: html, text, full: html, text
  • src/jkOwnLib/xensmall.c - lines changed 4, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/lib/agp.c - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/altGraphX.c - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/bedDetail.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/borf.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/genoLay.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/ggCluster.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hgFind.c - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/hgFindSpecCustom.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 14, context: html, text, full: html, text
  • src/hg/lib/rmskOut.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/rmskOut2.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/sqlProg.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/wikiTrack.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/encode3/validateFiles/validateFiles.c - lines changed 6, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/featureBits/featureBits.c - lines changed 3, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/getRnaPred/getRnaPred.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/pslReps/pslReps.c - lines changed 4, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/mouseStuff/chainToPsl/chainToPsl.c - lines changed 12, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/mouseStuff/mafCoverage/mafCoverage.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/hg/utils/tdbQuery/tdbQuery.c - lines changed 2, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/ameme/ameme.c - lines changed 6, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/ameme/fragFind.c - lines changed 4, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/parasol/para/para.c - lines changed 4, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/parasol/paraHub/paraHub.c - lines changed 1, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/parasol/paraNodeStart/paraNodeStart.c - lines changed 1, context: html, text, full: html, text
• fixup gcc warnings for -Wunused-but-set-variable refs #16121
  
  • src/parasol/parasol/parasol.c - lines changed 2, context: html, text, full: html, text
• v323 final build refs #16092
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v323
  
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text