All File Changes
v325_preview to v325_preview2 (2015-11-02 to 2015-11-09) v325
- src/hg/cirm/cdw/wrangle/addMetaDataToJson/addMetaDataToJson
- lines changed 14, context: html, text, full: html, text
Fixing this program up a bit so it works in the rnaSeq pipeline, refs #16244
- src/hg/cirm/cdw/wrangle/matrixFilter/makefile
- lines changed 6, context: html, text, full: html, text
Makefile for matrixFilter
- src/hg/cirm/cdw/wrangle/matrixFilter/matrixFilter
- lines changed 101, context: html, text, full: html, text
A small project for CIRM that filters a matrix, not used directly but a nice bit of code
- src/hg/hgIntegrator/hgIntegrator.c
- lines changed 10, context: html, text, full: html, text
Adding a very simple output header comment and user-defined region comments.
- src/hg/hgMirror/hgMirror
- lines changed 12, context: html, text, full: html, text
restart mysql after cancelled download in hgMirror, refs #16294
- src/hg/hgTracks/bamTrack.c
- lines changed 16, context: html, text, full: html, text
sometimes Complete Genomics bams have records with no alignment in them.
Ignore them #16339
- src/hg/hgTracks/chainTrack.c
- lines changed 12, context: html, text, full: html, text
implement score and chromosome filter in bigChain load function #16314
- lines changed 1, context: html, text, full: html, text
oops, fix a problem with bigChain filtering that Angie found
- src/hg/hgTracks/extTools.c
- lines changed 5, context: html, text, full: html, text
fixing off-by-one errors in external tools menu, refs #16308
- src/hg/hgTracks/extTools.ra
- lines changed 5, context: html, text, full: html, text
fixing off-by-one errors in external tools menu, refs #16308
- lines changed 12, context: html, text, full: html, text
adding PFAM to external tools menu refs #16308
- src/hg/hgTracks/hgTracks.c
- lines changed 8, context: html, text, full: html, text
a very basic instrumentation of UDC (no redmine)
- src/hg/hgTracks/menu.c
- lines changed 1, context: html, text, full: html, text
fixing uppercase/lowercase issue in menu, refs #16307
- src/hg/hgTracks/wigMafTrack.c
- lines changed 9, context: html, text, full: html, text
a very basic instrumentation of UDC (no redmine)
- src/hg/hgc/hgc.c
- lines changed 4, context: html, text, full: html, text
Re-adding code removed by mistake to deal with gcc warnings for -Wunused-but-set-variable, fixes Ecores track display in fugu, refs #16121
- src/hg/hgc/mafClick.c
- lines changed 524, context: html, text, full: html, text
remove GSID code from mafClick.c (no redmine)
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 18, context: html, text, full: html, text
Updating index page with top menu bar dropdown links announcement refs #16022
- src/hg/htdocs/inc/globalNavBar.inc
- lines changed 2, context: html, text, full: html, text
Correctly the related link information for the dropdown menu refs #16022
- src/hg/htdocs/indexNews.html
- lines changed 47, context: html, text, full: html, text
Updating index page with top menu bar dropdown links announcement refs #16022
- src/hg/js/hgTracks.js
- lines changed 1, context: html, text, full: html, text
fixing off-by-one errors in external tools menu, refs #16308
- src/hg/js/model/hgIntegrator/hgIntegratorModel.js
- lines changed 3, context: html, text, full: html, text
When no user regions have been defined, don't clobber hgi_range to position
unless it was already set to userRegions.
- src/hg/lib/hgMaf.c
- lines changed 1, context: html, text, full: html, text
use ';' to separate MAF lines in bigMaf instead of '\001' #15935
- src/hg/lib/trackDbCustom.c
- lines changed 1, context: html, text, full: html, text
implement score and chromosome filter in bigChain load function #16314
- src/hg/lib/web.c
- lines changed 1, context: html, text, full: html, text
Undoing base tag addition to fix unintended bug, refs #16326
- src/hg/makeDb/doc/oreganno/oreganno.txt
- lines changed 136, context: html, text, full: html, text
Adding ORegAnno track documentation, refs #15957
- src/hg/makeDb/schema/all.joiner
- lines changed 5, context: html, text, full: html, text
Added rules for Yale Pseudogenes 60 track; refs #16284
- src/hg/makeDb/trackDb/human/hg19/pseudoYale60.html
- lines changed 12, context: html, text, full: html, text
Updating Yale Pseudo 60 Description Page
- src/inc/udc.h
- lines changed 2, context: html, text, full: html, text
a very basic instrumentation of UDC (no redmine)
- src/lib/net.c
- lines changed 4, context: html, text, full: html, text
user got EINTR Error (Interrupted system call) so we should retry.
- src/lib/udc.c
- lines changed 28, context: html, text, full: html, text
a very basic instrumentation of UDC (no redmine)
- src/utils/qa/weeklybld/boxRelease.csh
- lines changed 6, context: html, text, full: html, text
adding one more paranoid check that the root account dsa keys have been removed
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 2, context: html, text, full: html, text
v325 preview2 refs #16299
- src/utils/qa/weeklybld/cherryPickCommits.csh
- src/utils/qa/weeklybld/doHgNearTestRobot.csh
- src/utils/qa/weeklybld/doNewBranch.csh
- src/utils/qa/weeklybld/doNewReview.csh
- src/utils/qa/weeklybld/doNewReview2.csh
- src/utils/qa/weeklybld/doSearchRobot.csh
- src/utils/qa/weeklybld/patchBranch.csh
- src/utils/qa/weeklybld/revertCommits.csh
- src/utils/qa/weeklybld/updateBrowserboxbeta.csh
- lines changed: 1029
- files changed: 43