Commits for galt

v326_base to v327_preview (2015-12-07 to 2015-12-14) v327

• Multi-region (exonMostly). This work allows people to look at virtual chromosomes from a list of regions and then navigate and perform all of the usual functions on it.
  
  • src/hg/hgConvert/hgConvert.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgIntegrator/hgIntegrator.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/bedTrack.c - lines changed 24, context: html, text, full: html, text
  • src/hg/hgTracks/cds.c - lines changed 79, context: html, text, full: html, text
  • src/hg/hgTracks/config.c - lines changed 237, context: html, text, full: html, text
  • src/hg/hgTracks/cytoBandTrack.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgTracks/expRatioTracks.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/extTools.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/factorSource.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/gtexTracks.c - lines changed 112, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 4237, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 190, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c - lines changed 46, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h - lines changed 18, context: html, text, full: html, text
  • src/hg/hgTracks/menu.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/rmskJoinedTrack.c - lines changed 113, context: html, text, full: html, text
  • src/hg/hgTracks/rmskTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1308, context: html, text, full: html, text
  • src/hg/hgTracks/snakeTrack.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgTracks/variation.c - lines changed 23, context: html, text, full: html, text
  • src/hg/hgVai/hgVai.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 31, context: html, text, full: html, text
  • src/hg/inc/cart.h - lines changed 11, context: html, text, full: html, text
  • src/hg/js/autocomplete.js - lines changed 9, context: html, text, full: html, text
  • src/hg/js/hgGateway.js - lines changed 5, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 713, context: html, text, full: html, text
  • src/hg/js/utils.js - lines changed 43, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 53, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 30, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg17.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg18.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/altLocations.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/altLocations.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/utils/cpAndLinkToResourceFiles.pl - lines changed 4, context: html, text, full: html, text
  • src/inc/spaceSaver.h - lines changed 30, context: html, text, full: html, text
  • src/inc/udc.h - lines changed 5, context: html, text, full: html, text
  • src/lib/jsonParse.c - lines changed 4, context: html, text, full: html, text
  • src/lib/spaceSaver.c - lines changed 114, context: html, text, full: html, text
  • src/lib/udc.c - lines changed 22, context: html, text, full: html, text
• needs limits.h
  
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
• swapped lines because it should be the other order.
  
  • src/hg/makeDb/trackDb/makefile - lines changed 6, context: html, text, full: html, text
• Added a warning about running multiple instances
  
  • src/hg/makeDb/trackDb/makefile - lines changed 4, context: html, text, full: html, text
• oops fix spelling of chromosome
  
  • src/hg/hgTracks/config.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
• cleanup
  
  • src/hg/hgTracks/hgTracks.c - lines changed 32, context: html, text, full: html, text
• fixing 12242 comment 92 part 2. If guidelines are turned off, the 'Highlighting alternating regions' doesn't work ( reported by kate )
  
  • src/hg/hgTracks/hgTracks.c - lines changed 7, context: html, text, full: html, text
• v327 preview1 refs #16419
  
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text