File Changes for kate

v331_preview to v331_preview2 (2016-03-28 to 2016-04-04) v331

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 6, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
• src/hg/hgTracks/gtexTracks.c
  • lines changed 2, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
  • lines changed 36, context: html, text, full: html, text
    Add total expression to details page. Correct map box size problem. refs #15645
    
  • lines changed 21, context: html, text, full: html, text
    Added option to suppres display of gene model (instead just show a line covering gene extent). Kind of works, but theres a layout problem that causes bottom-most gene to be cut off
    
  • lines changed 4, context: html, text, full: html, text
    Strip off repetitive prefix from gene description. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    Remove unhelpful indicator of up-regulation in mouseover. refs #15645
    
  • lines changed 31, context: html, text, full: html, text
    Add white background box to graph, and tweak graph sizes. refs #15645
    
  • lines changed 1, context: html, text, full: html, text
    Darken graph outline box slightly. refs #15645
    
  • lines changed 3, context: html, text, full: html, text
    Make magenta bar tip for exceeding view limits a touch bigger (JK input). refs #15645
    
  • lines changed 34, context: html, text, full: html, text
    Custom draw code for squish mode. refs #15645
    
  • lines changed 34, context: html, text, full: html, text
    Shenanigans to get squish mode working. refs #15645
    
  • lines changed 7, context: html, text, full: html, text
    Another fix for compatibility with multi-region. refs #15645
    
  • lines changed 38, context: html, text, full: html, text
    Merge branch 'master' into gtexUiExon
    
  • lines changed 61, context: html, text, full: html, text
    Fixes to 'no gene model display', and make it default, as per JK. refs #15645
    
• src/hg/hgTracks/hgTracks.h
  • lines changed 9, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 17, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
  • lines changed 2, context: html, text, full: html, text
    Finally found where labeling happens, updating comment
    
• src/hg/hgc/gtexClick.c
  • lines changed 9, context: html, text, full: html, text
    Add total expression to details page. Correct map box size problem. refs #15645
    
• src/hg/inc/gtexGeneBed.h
  • lines changed 4, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
• src/hg/inc/gtexUi.h
  • lines changed 4, context: html, text, full: html, text
    Added option to suppres display of gene model (instead just show a line covering gene extent). Kind of works, but theres a layout problem that causes bottom-most gene to be cut off
    
  • lines changed 1, context: html, text, full: html, text
    Fixes to 'no gene model display', and make it default, as per JK. refs #15645
    
• src/hg/lib/gtexGeneBed.c
  • lines changed 10, context: html, text, full: html, text
    Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
    
• src/hg/lib/gtexUi.c
  • lines changed 25, context: html, text, full: html, text
    Added option to suppres display of gene model (instead just show a line covering gene extent). Kind of works, but theres a layout problem that causes bottom-most gene to be cut off
    
  • lines changed 18, context: html, text, full: html, text
    Hide M/F comparison feature for now. Need to rethink values displayed in comparison (should be fold or else indicate total expression). refs #15645
    
  • lines changed 7, context: html, text, full: html, text
    Merge master, fix conflict.
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    Add gtexDonor table. refs #15645
    
• src/hg/makeDb/trackDb/human/trackDb.gtex.ra
  • lines changed 4, context: html, text, full: html, text
    Tweak title and add release tags.
    
  • lines changed 1, context: html, text, full: html, text
    Remove offending release tag from composite.
    
  • lines changed 1, context: html, text, full: html, text
    Tweak track label. Simpler is better. refs #15645
    
• src/lib/tests/testSum.c
  • lines changed 35, context: html, text, full: html, text
    Fix test build err
    
• src/lib/tests/testSumDoubles.c
  • lines changed 35, context: html, text, full: html, text
    Fix test build err