Commits for kate

v331_preview to v331_preview2 (2016-03-28 to 2016-04-04) v331

• Add support for filter on score. Show total median expression (from which score is computed) on details page. refs #15645
  
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/gtexTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 17, context: html, text, full: html, text
  • src/hg/inc/gtexGeneBed.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/gtexGeneBed.c - lines changed 10, context: html, text, full: html, text
• Tweak title and add release tags.
  
  • src/hg/makeDb/trackDb/human/trackDb.gtex.ra - lines changed 4, context: html, text, full: html, text
• Add total expression to details page. Correct map box size problem. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 36, context: html, text, full: html, text
  • src/hg/hgc/gtexClick.c - lines changed 9, context: html, text, full: html, text
• Fix test build err
  
  • src/lib/tests/testSum.c - lines changed 35, context: html, text, full: html, text
  • src/lib/tests/testSumDoubles.c - lines changed 35, context: html, text, full: html, text
• Remove offending release tag from composite.
  
  • src/hg/makeDb/trackDb/human/trackDb.gtex.ra - lines changed 1, context: html, text, full: html, text
• Added option to suppres display of gene model (instead just show a line covering gene extent). Kind of works, but theres a layout problem that causes bottom-most gene to be cut off
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 21, context: html, text, full: html, text
  • src/hg/inc/gtexUi.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/gtexUi.c - lines changed 25, context: html, text, full: html, text
• Strip off repetitive prefix from gene description. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 4, context: html, text, full: html, text
• Hide M/F comparison feature for now. Need to rethink values displayed in comparison (should be fold or else indicate total expression). refs #15645
  
  • src/hg/lib/gtexUi.c - lines changed 18, context: html, text, full: html, text
• Remove unhelpful indicator of up-regulation in mouseover. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 1, context: html, text, full: html, text
• Add white background box to graph, and tweak graph sizes. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 31, context: html, text, full: html, text
• Merge branch 'gtexUiBox'
  
• Merge master, fix conflict.
  
  • src/hg/lib/gtexUi.c - lines changed 7, context: html, text, full: html, text
• Add gtexDonor table. refs #15645
  
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Darken graph outline box slightly. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 1, context: html, text, full: html, text
• Make magenta bar tip for exceeding view limits a touch bigger (JK input). refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 3, context: html, text, full: html, text
• Custom draw code for squish mode. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 34, context: html, text, full: html, text
• Shenanigans to get squish mode working. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 34, context: html, text, full: html, text
• Another fix for compatibility with multi-region. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 7, context: html, text, full: html, text
• Merge branch 'master' into gtexUiExon
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 38, context: html, text, full: html, text
• Fixes to 'no gene model display', and make it default, as per JK. refs #15645
  
  • src/hg/hgTracks/gtexTracks.c - lines changed 61, context: html, text, full: html, text
  • src/hg/inc/gtexUi.h - lines changed 1, context: html, text, full: html, text
• Finally found where labeling happens, updating comment
  
  • src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text
• Tweak track label. Simpler is better. refs #15645
  
  • src/hg/makeDb/trackDb/human/trackDb.gtex.ra - lines changed 1, context: html, text, full: html, text