All File Changes

v344_preview2 to v344_base (2017-01-23 to 2017-01-30) v344

• src/hg/cirm/cdw/cdwServeTagStorm/cdwServeTagStorm.c
  • lines changed 85, context: html, text, full: html, text
    ee1058e0980c6fde09406a1a06323eb4aa13d732 Mon Jan 23 13:35:59 2017 -0800
    Let users get tagStorm files as a .txt file, refs #17870
  • lines changed 9, context: html, text, full: html, text
    9c1e9a13c2fae07131ed98e751bc8c8caa0ae9eb Fri Jan 27 11:10:31 2017 -0800
    Adding in an option to convert the tagStorm to tsv and serve the tsv data. refs #17870
• src/hg/cirm/cdw/cdwServeTagStorm/makefile
  • lines changed 16, context: html, text, full: html, text
    ee1058e0980c6fde09406a1a06323eb4aa13d732 Mon Jan 23 13:35:59 2017 -0800
    Let users get tagStorm files as a .txt file, refs #17870
• src/hg/cirm/cdw/cdwWebBrowse/cdwFlowCharts.c
  • lines changed 324, context: html, text, full: html, text
    b76088c7041e5cb39b03337c8fe2d5368abbe8cc Mon Jan 23 13:39:42 2017 -0800
    Updating the flowchart code, refs #17544
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 18, context: html, text, full: html, text
    b76088c7041e5cb39b03337c8fe2d5368abbe8cc Mon Jan 23 13:39:42 2017 -0800
    Updating the flowchart code, refs #17544
  • lines changed 5, context: html, text, full: html, text
    87f1208bd6f0c79b3adac68665a8f8b5647a36ef Fri Jan 27 11:09:36 2017 -0800
    Adding in a tsv format option to the browse data set webpage and fixing a bug noticed by Clay, refs #17870
• src/hg/hgTracks/hgTracks.h
  • lines changed 8, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/hgTracks/simpleTracks.c
  • lines changed 27, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/hgTracks/transMapTracks.c
  • lines changed 5, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/hgTracks/wigMafTrack.c
  • lines changed 33, context: html, text, full: html, text
    5c57a29b664add8c4b3b3fe647e74e319d2351bb Thu Jan 26 10:02:44 2017 -0800
    fix #18746
• src/hg/hgc/hgc.c
  • lines changed 27, context: html, text, full: html, text
    8f9e939cc256fdaaf7bda199bd9099538bfc6fb7 Mon Jan 23 13:46:52 2017 -0800
    print out extra fields from bigPsl
• src/hg/hgc/hgc.h
  • lines changed 6, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/hgc/transMapClick.c
  • lines changed 174, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
  • lines changed 1, context: html, text, full: html, text
    bcae7a7f697e0aed7b1a1e81b230bd321197633d Sun Jan 8 16:27:47 2017 -0800
    fixed active db check for bigTransMap
  • lines changed 16, context: html, text, full: html, text
    30bf4401ae2d6c5a6b2c9df0cb0885460710d4eb Mon Jan 23 19:25:03 2017 -0800
    fix link to transcript alignment viewer for bigTransMap tracks
  • lines changed 81, context: html, text, full: html, text
    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 1, context: html, text, full: html, text
    9ab6a3d9af55eda4d919448c100447195d14e594 Tue Jan 24 16:37:11 2017 -0800
    Bumping setting spectrum from full to base with input from Ensembl and a change in documentation where we no longer say it should work with color, refs #10939
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 14, context: html, text, full: html, text
    e0075a4d288799724e86ebb9611948ed2f5820fa Tue Jan 24 15:35:20 2017 -0800
    Updating information about spectrum in trackDbLibrary.shtml where it incorrectly described used of color, refs #10939
  • lines changed 1, context: html, text, full: html, text
    f4122cd414026ce0bfb784cf70a30ee7a653bb41 Tue Jan 24 15:45:17 2017 -0800
    Fixing a html item in trackDbLibrary.shtml, refs #10939
• src/hg/htdocs/images/Microtus_ochrogaster.jpg
  • lines changed 0, context: html, text, full: html, text
    3871f1bd6012e5fc02fb67ff508ffaf560e129ec Wed Jan 25 09:29:47 2017 -0800
    photo of prairie mole from National Park Service refs #9871
• src/hg/inc/bigTransMap.h
  • lines changed 96, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
  • lines changed 2, context: html, text, full: html, text
    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/inc/hdb.h
  • lines changed 9, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
  • lines changed 1, context: html, text, full: html, text
    a94512d116a2da4614b3115ed210101f30fbbbd2 Mon Jan 23 12:39:13 2017 -0800
    make max length of chromosome name be 255 instead of 32.
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    aab9cab184eb26a03a49ef5cf63cc8a503972a85 Mon Jan 30 10:02:09 2017 -0800
    New version number v344
• src/hg/lib/bigTransMap.as
  • lines changed 47, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
  • lines changed 1, context: html, text, full: html, text
    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/lib/bigTransMap.c
  • lines changed 370, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
  • lines changed 11, context: html, text, full: html, text
    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/lib/hdb.c
  • lines changed 26, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/lib/hui.c
  • lines changed 9, context: html, text, full: html, text
    d53e5750a3d3e8b7da4d38d6242022bdece345e2 Tue Jan 24 13:00:31 2017 -0800
    changes to tagStorm support. #18183
  • lines changed 2, context: html, text, full: html, text
    0c98d63ad57dfa6963d012f5bc8400b8c0028776 Fri Jan 27 10:52:24 2017 -0800
    check for null meta values in trackDb
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
• src/hg/lib/mdb.c
  • lines changed 2, context: html, text, full: html, text
    d53e5750a3d3e8b7da4d38d6242022bdece345e2 Tue Jan 24 13:00:31 2017 -0800
    changes to tagStorm support. #18183
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    d53e5750a3d3e8b7da4d38d6242022bdece345e2 Tue Jan 24 13:00:31 2017 -0800
    changes to tagStorm support. #18183
• src/hg/makeDb/doc/melGal5/initialBuild.txt
  • lines changed 5, context: html, text, full: html, text
    77b3694f04fb7a5010a04c1b57c518cac46368c3 Mon Jan 30 09:15:51 2017 -0800
    catch up geoFor1 and falPer1 lastz/chain/net refs #18739
• src/hg/makeDb/doc/melGal5/lastzRuns.txt
  • lines changed 119, context: html, text, full: html, text
    77b3694f04fb7a5010a04c1b57c518cac46368c3 Mon Jan 30 09:15:51 2017 -0800
    catch up geoFor1 and falPer1 lastz/chain/net refs #18739
• src/hg/makeDb/doc/micOch1/initialBuild.txt
  • lines changed 703, context: html, text, full: html, text
    ca8aad823e63a1a4b3aca4739d054f9232562b0b Thu Jan 26 11:01:51 2017 -0800
    build doc for micOch1 refs #9871
• src/hg/makeDb/doc/micOch1/ucscCompositeAgp.pl
  • lines changed 44, context: html, text, full: html, text
    ca8aad823e63a1a4b3aca4739d054f9232562b0b Thu Jan 26 11:01:51 2017 -0800
    build doc for micOch1 refs #9871
• src/hg/makeDb/doc/micOch1/unlocalized.pl
  • lines changed 66, context: html, text, full: html, text
    ca8aad823e63a1a4b3aca4739d054f9232562b0b Thu Jan 26 11:01:51 2017 -0800
    build doc for micOch1 refs #9871
• src/hg/makeDb/doc/micOch1/unplaced.pl
  • lines changed 34, context: html, text, full: html, text
    ca8aad823e63a1a4b3aca4739d054f9232562b0b Thu Jan 26 11:01:51 2017 -0800
    build doc for micOch1 refs #9871
• src/hg/makeDb/doc/rn6.txt
  • lines changed 1650, context: html, text, full: html, text
    20459ec6f898bc8b5afeddb582b249cf007a185b Tue Jan 24 15:21:48 2017 -0800
    completed 20-way alignment refs #18656
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    c95e40873d16d2480733c98f7752ca4b26d3a8e6 Thu Jan 26 11:00:47 2017 -0800
    adding micOch1 to the update alignments refs #9871
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 21, context: html, text, full: html, text
    3648c849e58893972d8c79310950ec54ce1a854e Wed Jan 25 19:52:16 2017 -0800
    Added micOch1 Microtus ochrogaster - prairie vole refs #9871
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    c95e40873d16d2480733c98f7752ca4b26d3a8e6 Thu Jan 26 11:00:47 2017 -0800
    adding micOch1 to the update alignments refs #9871
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    3648c849e58893972d8c79310950ec54ce1a854e Wed Jan 25 19:52:16 2017 -0800
    Added micOch1 Microtus ochrogaster - prairie vole refs #9871
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 18, context: html, text, full: html, text
    b8335e320a568efab85118c16e0c6b4ac79a89db Fri Dec 16 18:24:43 2016 -0800
    subsitute database for $db in bigDataUrl
• src/hg/makeDb/schema/all.joiner
  • lines changed 14, context: html, text, full: html, text
    7fd8cdb277f61ae6edc8cc5261bf8068d20a9de9 Thu Jan 26 12:23:19 2017 -0800
    adding rules for micOch1 refs #9871
• src/hg/makeDb/trackDb/bats/rouAeg1/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/bison/bisBis1/trackDb.ra
  • lines changed 5, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/chicken/galGal5/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/chicken/galGal5/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/gorilla/gorGor4/description.html
  • lines changed 3, context: html, text, full: html, text
    ba3890b4c9ef97540536d294b0f676aa19939ea4 Tue Jan 24 10:51:03 2017 -0800
    Fixing typo in gorGor4 description page genbank accession numbers found by Mark, refs #18716
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
  • lines changed 1, context: html, text, full: html, text
    4af6dcf3c8c13804bb4d4a52587985345f99714e Wed Jan 25 10:25:03 2017 -0800
    trackDb files for micOch1 refs #9871
• src/hg/makeDb/trackDb/micOch/micOch1/description.html
  • lines changed 64, context: html, text, full: html, text
    4af6dcf3c8c13804bb4d4a52587985345f99714e Wed Jan 25 10:25:03 2017 -0800
    trackDb files for micOch1 refs #9871
• src/hg/makeDb/trackDb/micOch/micOch1/gap.html
  • lines changed 31, context: html, text, full: html, text
    4af6dcf3c8c13804bb4d4a52587985345f99714e Wed Jan 25 10:25:03 2017 -0800
    trackDb files for micOch1 refs #9871
• src/hg/makeDb/trackDb/micOch/micOch1/gold.html
  • lines changed 33, context: html, text, full: html, text
    4af6dcf3c8c13804bb4d4a52587985345f99714e Wed Jan 25 10:25:03 2017 -0800
    trackDb files for micOch1 refs #9871
• src/hg/makeDb/trackDb/micOch/micOch1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    4af6dcf3c8c13804bb4d4a52587985345f99714e Wed Jan 25 10:25:03 2017 -0800
    trackDb files for micOch1 refs #9871
• src/hg/makeDb/trackDb/rat/rn6/cons20way.html
  • lines changed 465, context: html, text, full: html, text
    937738d7b80e53631d5598a2731aac63c54430fe Tue Jan 24 10:59:33 2017 -0800
    description page for 20-way refs #18656
  • lines changed 20, context: html, text, full: html, text
    a9d6033117bea69474ef6c633381794d8fe76a74 Tue Jan 24 11:15:31 2017 -0800
    reset MAF type used in alignment refs #18656
• src/hg/makeDb/trackDb/rat/rn6/ratChainNet.html
  • lines changed 164, context: html, text, full: html, text
    1409339509c798dd049a8c99a61881413fedcf88 Sun Jan 29 13:30:25 2017 -0800
    add documentation for chain net composite and reset primate label to primates refs #18656
• src/hg/makeDb/trackDb/rat/rn6/trackDb.20way.ra
  • lines changed 102, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
  • lines changed 2, context: html, text, full: html, text
    f204420da68ebeb775d15a9668329833d59aeafd Wed Jan 25 13:07:56 2017 -0800
    correct viewLimits on the phyloP track refs #18656
  • lines changed 1, context: html, text, full: html, text
    910444b42b5afa38484b578483d46da3b3ac1bf7 Sat Jan 28 08:32:32 2017 -0800
    turning on composite chain/net tracks and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/rat/rn6/trackDb.chainNet.ra
  • lines changed 12, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
  • lines changed 4, context: html, text, full: html, text
    1409339509c798dd049a8c99a61881413fedcf88 Sun Jan 29 13:30:25 2017 -0800
    add documentation for chain net composite and reset primate label to primates refs #18656
• src/hg/makeDb/trackDb/rat/rn6/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
  • lines changed 2, context: html, text, full: html, text
    910444b42b5afa38484b578483d46da3b3ac1bf7 Sat Jan 28 08:32:32 2017 -0800
    turning on composite chain/net tracks and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/rat/rn6/vertebrateChainNet.ra
  • lines changed 338, context: html, text, full: html, text
    910444b42b5afa38484b578483d46da3b3ac1bf7 Sat Jan 28 08:32:32 2017 -0800
    turning on composite chain/net tracks and 20-way alignment refs #18656
  • lines changed 1, context: html, text, full: html, text
    1409339509c798dd049a8c99a61881413fedcf88 Sun Jan 29 13:30:25 2017 -0800
    add documentation for chain net composite and reset primate label to primates refs #18656
• src/hg/makeDb/trackDb/tagTypes.tab
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    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
  • lines changed 1, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 102, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra
  • lines changed 59, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/makeDb/trackDb/trackDb.transMap.ra
  • lines changed 113, context: html, text, full: html, text
    b8335e320a568efab85118c16e0c6b4ac79a89db Fri Dec 16 18:24:43 2016 -0800
    subsitute database for $db in bigDataUrl
  • lines changed 48, context: html, text, full: html, text
    314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800
    bigTransMap hgc working
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    491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800
    add more information to display of transmap source gene
• src/hg/makeDb/trackDb/transMapEnsemblV4.html
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    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/transMapEstV4.html
  • lines changed 12, context: html, text, full: html, text
    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/transMapRefseqV4.html
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    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/transMapRnaV4.html
  • lines changed 12, context: html, text, full: html, text
    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/transMapTailer.html
  • lines changed 108, context: html, text, full: html, text
    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/transMapV4.html
  • lines changed 25, context: html, text, full: html, text
    12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800
    added transMap V4 html doc
• src/hg/makeDb/trackDb/turkey/melGal5/trackDb.ra
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    7b753b9d978b16b5aa3bdbbc6e30ca8ee09d0423 Tue Jan 24 08:06:17 2017 -0800
    catching up chain net overrides for rat rn6 and 20-way alignment refs #18656
• src/hg/utils/makefile
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMap/makefile
  • lines changed 23, context: html, text, full: html, text
    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMap/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMapPostChain/makefile
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMapPostChain/pslMapPostChain.c
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslMapPostChain/tests/makefile
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    665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800
    added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
• src/hg/utils/pslToBigPsl/pslToBigPsl.c
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    b9225a69d1b8c5f46549db50760d807b358da7c6 Tue Jan 24 13:27:01 2017 -0800
    change comment in pslToBigPsl
• src/inc/basicBed.h
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    a94512d116a2da4614b3115ed210101f30fbbbd2 Mon Jan 23 12:39:13 2017 -0800
    make max length of chromosome name be 255 instead of 32.
• src/product/README.install
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    4b36ebef6cfc212e5439943c36559efcacb15552 Wed Jan 25 11:28:31 2017 -0800
    Changing outdated genomeblat link to kentinformatics as per code review, refs #18724
• src/product/mirrorManual.txt
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    4b36ebef6cfc212e5439943c36559efcacb15552 Wed Jan 25 11:28:31 2017 -0800
    Changing outdated genomeblat link to kentinformatics as per code review, refs #18724
• src/tagStorm/tagStormAssignMeta/makefile
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    d53e5750a3d3e8b7da4d38d6242022bdece345e2 Tue Jan 24 13:00:31 2017 -0800
    changes to tagStorm support. #18183
• src/tagStorm/tagStormAssignMeta/tagStormAssignMeta.c
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    d53e5750a3d3e8b7da4d38d6242022bdece345e2 Tue Jan 24 13:00:31 2017 -0800
    changes to tagStorm support. #18183
• src/utils/qa/weeklybld/buildEnv.csh
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    fc49d9c94c69d3c19ecff8a7a7598f2c4630445e Mon Jan 30 10:01:14 2017 -0800
    v344 final build refs #18686

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