Commits for markd

v344_preview2 to v344_base (2017-01-23 to 2017-01-30) v344

b8335e320a568efab85118c16e0c6b4ac79a89db Fri Dec 16 18:24:43 2016 -0800

• subsitute database for $db in bigDataUrl
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.transMap.ra - lines changed 113, context: html, text, full: html, text

314b81670d2d1446d4da81108ac0ce2a72fc569d Fri Jan 6 15:32:57 2017 -0800

• bigTransMap hgc working
  • src/hg/hgTracks/hgTracks.h - lines changed 8, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 27, context: html, text, full: html, text
  • src/hg/hgTracks/transMapTracks.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 6, context: html, text, full: html, text
  • src/hg/hgc/transMapClick.c - lines changed 174, context: html, text, full: html, text
  • src/hg/inc/bigTransMap.h - lines changed 96, context: html, text, full: html, text
  • src/hg/inc/hdb.h - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/bigTransMap.as - lines changed 47, context: html, text, full: html, text
  • src/hg/lib/bigTransMap.c - lines changed 370, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 26, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.transMap.ra - lines changed 48, context: html, text, full: html, text

bcae7a7f697e0aed7b1a1e81b230bd321197633d Sun Jan 8 16:27:47 2017 -0800

• fixed active db check for bigTransMap
  • src/hg/hgc/transMapClick.c - lines changed 1, context: html, text, full: html, text

12a702e7a2d886f5ad385232f7b1cddfb737636b Tue Jan 10 15:41:42 2017 -0800

• added transMap V4 html doc
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEnsemblV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEstV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRefseqV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRnaV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapTailer.html - lines changed 108, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapV4.html - lines changed 25, context: html, text, full: html, text

8ba3d5b6a26e9f23acfd8576637221146e4eaaec Mon Jan 23 16:03:18 2017 -0800

• Merge branch 'bigTransMap'

30bf4401ae2d6c5a6b2c9df0cb0885460710d4eb Mon Jan 23 19:25:03 2017 -0800

• fix link to transcript alignment viewer for bigTransMap tracks
  • src/hg/hgc/transMapClick.c - lines changed 16, context: html, text, full: html, text

491bae89e94aedf11666a9e662d2d80012cc312d Wed Jan 25 07:38:10 2017 -0800

• add more information to display of transmap source gene
  • src/hg/hgc/transMapClick.c - lines changed 81, context: html, text, full: html, text
  • src/hg/inc/bigTransMap.h - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/bigTransMap.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/bigTransMap.c - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.transMap.ra - lines changed 4, context: html, text, full: html, text

665aaac218f65cc8035ec9a10e505e36bd5828d1 Thu Jan 26 18:02:41 2017 -0800

• added pslMapPostChain, a tool sometimes useful with pslMap. Also cleaned up pslMap makefiles
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/pslMap/makefile - lines changed 23, context: html, text, full: html, text
  • src/hg/utils/pslMap/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/pslMapPostChain/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/pslMapPostChain/pslMapPostChain.c - lines changed 322, context: html, text, full: html, text
  • src/hg/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl - lines changed 21, context: html, text, full: html, text
  • src/hg/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl - lines changed 51, context: html, text, full: html, text
  • src/hg/utils/pslMapPostChain/tests/makefile - lines changed 20, context: html, text, full: html, text