Commits for braney

v349_preview to v349_preview2 (2017-05-01 to 2017-05-08) v349

c46be5cebadbe532ca7f7fc2a5cde930554c7ae7 Tue May 2 11:20:34 2017 -0700

• first check in of hgComposite code.
  • src/hg/hgComposite/hgComposite.c - lines changed 846, context: html, text, full: html, text
  • src/hg/hgComposite/makefile - lines changed 17, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 38, context: html, text, full: html, text
  • src/hg/hgTracks/multiWig.c - lines changed 10, context: html, text, full: html, text
  • src/hg/inc/customComposite.h - lines changed 12, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 32, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 6, context: html, text, full: html, text

18013ec2828115838f4861b578dc1cbaa561f223 Wed May 3 07:38:45 2017 -0700

• alias Notamacropus eugenii
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 1, context: html, text, full: html, text

2679cdd794ef4fbc2ff87ec0f919bc0e93784b0c Wed May 3 15:11:45 2017 -0700

• fix default track colors on bigGenePred type
  • src/hg/hgTracks/bigBedTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 6, context: html, text, full: html, text

f90ad219df60f60f805f555eee38239aa2aa3d1a Sat May 6 06:37:31 2017 -0700

• make density graphs use exons instead of the length of the whole feature #19300
  • src/hg/hgTracks/simpleTracks.c - lines changed 24, context: html, text, full: html, text

d762c6dd610c1983daf0e73f3696960f286cdaf9 Sat May 6 11:30:17 2017 -0700

• make rangeTree functions thread safe.
  • src/inc/rbTree.h - lines changed 5, context: html, text, full: html, text
  • src/lib/rangeTree.c - lines changed 9, context: html, text, full: html, text
  • src/lib/rbTree.c - lines changed 36, context: html, text, full: html, text

f8de331fce87ec0df45e71399f7450c0dd69d189 Sat May 6 17:31:44 2017 -0700

• on going work on custom composites
  • src/hg/hgComposite/hgComposite.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/multiWig.c - lines changed 58, context: html, text, full: html, text
  • src/hg/inc/customComposite.h - lines changed 5, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/customComposite.c - lines changed 11, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text

3bd303d90463041294d0879f7a3ef64c6f8dcaf4 Sun May 7 17:44:39 2017 -0700

• ongoing work on custom composites
  • src/hg/hgComposite/hgComposite.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 64, context: html, text, full: html, text
  • src/hg/hgTracks/multiWig.c - lines changed 2, context: html, text, full: html, text

360e8cec003eeef6cdd6be49a75c74518bc6492a Sun May 7 18:19:45 2017 -0700

• add hgComposite to hg makefile
  • src/hg/makefile - lines changed 1, context: html, text, full: html, text

9c8cfc5f5d90d882743d66d2ebcae92f97ac816f Sun May 7 18:24:35 2017 -0700

• check in hgComposite help file
  • src/hg/htdocs/goldenPath/help/hgCompositeHelpText.html - lines changed 7, context: html, text, full: html, text