Commits for max

v349_base to v350_preview (2017-05-15 to 2017-05-22) v350

3c556eed91140fc152600a25bdccdc72cf9dc6b4 Mon May 15 12:55:38 2017 -0700

• fixing error message 'no value specified for field "settings"' by newer Mysql versions that do not accept missing fields in INSERT statements, This is another bug of the type previously fixed in refs #18626
  • src/hg/hgSession/hgSession.c - lines changed 2, context: html, text, full: html, text

03babf928b4b69bce4c86dcf5d0abab9a435e336 Mon May 15 13:08:09 2017 -0700

• fixing strange error when showing only 0 or 1 gene in hgGeneGraph, refs #18626
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 3, context: html, text, full: html, text

7a0a5b8714e42c126e2673f73d336d95c79633b2 Mon May 15 15:48:03 2017 -0700

• fixing bug reported by email to ChrisL, from John Chen. thanks Chris., no redmine (yet)
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

e1c83946159b3b16797cb9cd91ca52d24f73883a Mon May 15 16:21:22 2017 -0700

• CIRM: making the logout button work with HTTP Basic Auth
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 23, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLogoutJs.h - lines changed 26, context: html, text, full: html, text

e2316d8ff89ed1beb085f9169c4c7ca344affb20 Tue May 16 14:55:40 2017 -0700

• Changes to hgLogin and hgSession to replace hgLogin with Apache's Basic authentication system, refs #19424, primarily motivated by CIRM but hopefully useful in other contexts
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 11, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLogoutJs.h - lines changed 26, context: html, text, full: html, text
  • src/hg/hgLogin/hgLogin.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgSession/hgSession.c - lines changed 19, context: html, text, full: html, text
  • src/hg/inc/wikiLink.h - lines changed 15, context: html, text, full: html, text
  • src/hg/lib/logoutJs.h - lines changed 26, context: html, text, full: html, text
  • src/hg/lib/wikiLink.c - lines changed 116, context: html, text, full: html, text
  • src/lib/htmshell.c - lines changed 1, context: html, text, full: html, text
  • src/product/ex.hg.conf - lines changed 5, context: html, text, full: html, text

e3ed5309131999cbb6d837720d5e49d460d15838 Tue May 16 15:01:07 2017 -0700

• making HTTPHOST the default in ex.hg.conf
  • src/product/ex.hg.conf - lines changed 2, context: html, text, full: html, text

cf8cec85220443d790c83cb54adac5515989d40f Tue May 16 15:54:38 2017 -0700

• fixing an esoteric GCC warning, thanks Hiram
  • src/hg/lib/wikiLink.c - lines changed 1, context: html, text, full: html, text

f8cbb9d40119d1b7fd52578e08c4148e39e10ce4 Tue May 16 17:19:56 2017 -0700

• removing external tools link when on alternate chromosomes, e.g. on hg38, refs #16619
  • src/hg/hgTracks/extTools.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text

20bf8d47b6351e8406d616f91380dab4c2b3e896 Tue May 16 17:30:48 2017 -0700

• CIRM: fixing a bug in auth detection
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 2, context: html, text, full: html, text

23b0b620b9584c3fabecb98028183474094708b0 Tue May 16 17:47:43 2017 -0700

• CIRM: fixing missing permissions to files when login is email address
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 10, context: html, text, full: html, text
  • src/hg/cirm/cdw/lib/cdwLib.c - lines changed 2, context: html, text, full: html, text

f7848b9aa7b5d5a786ed49c64ee0f24e6ad3777d Tue May 16 18:11:55 2017 -0700

• CIRM: fixing loading bug that appears only with very old VCF files
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 11, context: html, text, full: html, text

16d99600473977053f8052c7e827a22ac5324c74 Wed May 17 13:42:30 2017 -0700

• fixing GBIC for systemd, no redmine yet
  • src/product/installer/browserSetup.sh - lines changed 12, context: html, text, full: html, text

ec74b71d82b5ee60aa2641765969e0ee86210e0c Thu May 18 09:02:46 2017 -0700

• fixing URL bug I introduced yesterday with my hgSession change. refs #19430
  • src/hg/hgSession/hgSession.c - lines changed 3, context: html, text, full: html, text

cd9e9bc3bea3e5438c2da40e57ffcb69c8fa2672 Fri May 19 13:35:52 2017 -0700

• adding all.joiner for the interactions track, refs #13634
  • src/hg/hgGeneGraph/hgGeneGraph - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 26, context: html, text, full: html, text

c131ed83cd627d80bd614262fc7d03e8f6d48ea6 Fri May 19 13:54:04 2017 -0700

• improving gene graph .as files a little
  • src/hg/lib/ggEventDb.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/ggEventText.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/ggGeneClass.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/ggGeneName.as - lines changed 1, context: html, text, full: html, text