All File Changes

v367_preview to v367_preview2 (2018-06-04 to 2018-06-11) v367

• src/hg/cirm/cdw/cdwMakePairedEndQa/cdwMakePairedEndQa.c
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    e438c540b405125ee6f78328f09e14054cdf670a Mon Jun 4 13:28:36 2018 -0700
    CIRM: fixing stupid typo in bowtie move of cdw
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    dcd4d579f74a2af013fbfe9c8c81c31b2962b0c9 Mon Jun 4 16:38:42 2018 -0700
    CIRM: small changes to cdwMakePairedEndQa and related tools to make debugging of problems easier next time.
• src/hg/encode3/encodeDataWarehouse/utils/edwSamPairedEndStats/edwSamPairedEndStats.c
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    dcd4d579f74a2af013fbfe9c8c81c31b2962b0c9 Mon Jun 4 16:38:42 2018 -0700
    CIRM: small changes to cdwMakePairedEndQa and related tools to make debugging of problems easier next time.
• src/hg/hgGene/gtex.c
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/hg/hgc/gtexClick.c
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/hg/hgc/gtexEqtlClusterClick.c
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/hg/htdocs/FAQ/FAQblat.html
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    c2f39f2d10a58aab1a211391ba33c3c71734d305 Thu Jun 7 19:25:53 2018 -0700
    small changes after code review for max. refs #21555
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    b5dc731e532a7b0da02f2053b3c0fe6d42dd45ed Fri Jun 8 11:02:38 2018 -0700
    changes after code review, refs #21555
• src/hg/inc/gtexUi.h
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/hg/lib/gtexUi.c
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/hg/lib/lrg.c
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    e640dce06376856492a074bcc8676267e8943584 Mon Jun 4 15:18:44 2018 -0700
    lrgReconstructSequence also needed updates to handle partial LRG mappings. sorta refs #13359 #17877
• src/hg/makeDb/crisprTrack/createBigBed.py
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    b5dc731e532a7b0da02f2053b3c0fe6d42dd45ed Fri Jun 8 11:02:38 2018 -0700
    changes after code review, refs #21555
• src/hg/makeDb/doc/equCab2.txt
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    1a4f79842ea38d0e8d5b42f9e78609ede7a8c75c Wed Jun 6 12:37:08 2018 -0700
    liftOver equCab2 to equCab3 refs #21223
• src/hg/makeDb/doc/equCab3/initialBuild.txt
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    b6e34f08d0a916ba7182dc28603ae0c8f11e69c8 Wed Jun 6 09:31:27 2018 -0700
    running up hg38 and mm10 lastz chainNet to equCab3 refs #21223
• src/hg/makeDb/doc/hg19.txt
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    19c635937827c3d038ab2c04f118eab06fc0082f Wed Jun 6 10:20:50 2018 -0700
    Added note for next time about dbVar FTP reorganization.
• src/hg/makeDb/doc/hg38/crispr.txt
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    478f754652556ea29fa614f89216ed1dc4ab9c36 Wed Jun 6 11:33:14 2018 -0700
    starting 10K shoulders crispr run refs #21575
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    b6e34f08d0a916ba7182dc28603ae0c8f11e69c8 Wed Jun 6 09:31:27 2018 -0700
    running up hg38 and mm10 lastz chainNet to equCab3 refs #21223
• src/hg/makeDb/doc/hg38/miRnaAtlas.txt
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    22da87555da04013fc59dfb49e167dc35d711f75 Mon Jun 4 15:34:17 2018 -0700
    Remake of miRna tissue atlas barChart with correctly formatted matrix file, refs #18508
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    f9fe266341e317c2c435daee9fdcf1c54c71ef9c Tue Jun 5 15:48:12 2018 -0700
    new version of miRna expression as a composite track and with gtex colors or as close as possible to gtex colors, refs #18508
• src/hg/makeDb/doc/mm10.txt
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    b6e34f08d0a916ba7182dc28603ae0c8f11e69c8 Wed Jun 6 09:31:27 2018 -0700
    running up hg38 and mm10 lastz chainNet to equCab3 refs #21223
• src/hg/makeDb/genbank/etc/genbank.conf
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    c5be7fa10d8b62474c291cf8ae1865dcc340c549 Wed Jun 6 09:46:19 2018 -0700
    fixing the perChromTables default equCab3/horse refs #21223
• src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
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    eea7b200538f1a2f46c12a3a9540c8956168d604 Wed Jun 6 10:48:58 2018 -0700
    Adding idXref setting to script that generates GENCODE trackDb .ra and .html. refs #21571
• src/hg/makeDb/trackDb/ECgene.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/fishClones.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/affyHuEx1.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/affyHumanExon.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/altGraphX.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/chainNetPlacental.ra
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    9b47c8524487e383b5ac3d7fd2103f724fd57df5 Wed Jun 6 14:15:44 2018 -0700
    adding equCab3 chainNet definitions refs #21223
• src/hg/makeDb/trackDb/human/cytoBand.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Pval.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Sites.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyEncode25bpProbes.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeBuFirstExon.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeBu_ORChID1.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeEgaspFull.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeEgaspPartial.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeEgaspSuper.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeEgaspUpdate.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeHapMapAlleleFreq.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeHapMapCov.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeRecombHotspot.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeRecombRate.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeReseqRegions.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeSangerGenoExprAssociation.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordMeth.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordMethSmoothed.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/haplotype.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/acembly.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/affyU133.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/chainSelf.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/chimpDels.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/cnp.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/ecoresFr1.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/ecoresTetraodon.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeAffyRnaSignal.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeAffyRnaTransfrags.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeAllElements.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeGencodeGene.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeGencodeIntron.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeGisChipPet.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeGisRnaPet.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeMlaganAlign.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeMlaganCons.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeMlaganElements.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeNhgriDnaseHs.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeAmplicon.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeBase.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeProb.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeRegulomeQuality.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeSangerChipH3H4.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeTbaAlign.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeTbaCons.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeTbaElements.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeUCDavisE2F1Median.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeUcsdNgGif.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeYaleAffyRNATars.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encodeYaleAffyRNATransMap.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/encode_tba23EvoFold.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/exoniphy.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/hapmapLd.html
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    bd83c1fe5613efb06a257f2c640ca9182c830bcc Tue Jun 5 11:14:48 2018 -0700
    Updating redirected and broken links for hg16, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg16/hg17Kg.html
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• src/hg/makeDb/trackDb/human/hg16/mzPt1Mm3Rn3Gg2_pHMM.html
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• src/hg/makeDb/trackDb/human/hg16/uniGene_2.html
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• src/hg/makeDb/trackDb/human/hg19/gnomad.html
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    c174a17abc268ae287c8f3e55fe14acbfbb63b77 Fri Jun 8 14:31:38 2018 -0700
    Reorganizing the Display Convections section for the gnomAD 2.0 track description page, refs #18951
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra
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• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV9.ra
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• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    22da87555da04013fc59dfb49e167dc35d711f75 Mon Jun 4 15:34:17 2018 -0700
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    f9fe266341e317c2c435daee9fdcf1c54c71ef9c Tue Jun 5 15:48:12 2018 -0700
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• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV19.ra
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• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.ra
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• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.ra
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• src/hg/makeDb/trackDb/human/nhgriDnaseHs.html
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• src/hg/makeDb/trackDb/human/perlegen.html
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• src/hg/makeDb/trackDb/human/snpRecombHotspot.html
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• src/hg/makeDb/trackDb/human/stsMap.html
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• src/hg/makeDb/trackDb/human/vegaGene.html
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• src/hg/makeDb/trackDb/knownGene.html
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• src/hg/makeDb/trackDb/miRNA.html
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• src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra
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    9b47c8524487e383b5ac3d7fd2103f724fd57df5 Wed Jun 6 14:15:44 2018 -0700
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM10.ra
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.ra
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM12.ra
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.ra
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.ra
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• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM15.ra
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• src/hg/makeDb/trackDb/snp.html
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• src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra
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    9b47c8524487e383b5ac3d7fd2103f724fd57df5 Wed Jun 6 14:15:44 2018 -0700
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• src/hg/makeDb/trackDb/trackDb.chainNet.ra
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    9b47c8524487e383b5ac3d7fd2103f724fd57df5 Wed Jun 6 14:15:44 2018 -0700
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• src/hg/near/hgNear/hgNearData/Human/gtex.html
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    008c1354e9fce6bef2c4d494a1afc8f22b92c56a Fri Jun 8 11:43:29 2018 -0700
    Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
• src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed
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    22da87555da04013fc59dfb49e167dc35d711f75 Mon Jun 4 15:34:17 2018 -0700
    Remake of miRna tissue atlas barChart with correctly formatted matrix file, refs #18508
• src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
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    dcd4d579f74a2af013fbfe9c8c81c31b2962b0c9 Mon Jun 4 16:38:42 2018 -0700
    CIRM: small changes to cdwMakePairedEndQa and related tools to make debugging of problems easier next time.
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    857e307d6e7abc0ffde11ce76522297c97457508 Tue Jun 5 10:15:50 2018 -0700
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• src/utils/qa/weeklybld/buildEnv.csh
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    e955f9a7386d9aa0e455816a6e9f6ad9b5ced5e0 Mon Jun 4 12:17:22 2018 -0700
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    ec5e4f077d5bab77d453fa1c88df5998c1cd4ea6 Mon Jun 11 09:56:17 2018 -0700
    v367 preview2 refs #21564
• src/utils/qa/weeklybld/doNewBranch.csh
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• src/utils/qa/weeklybld/doNewReview.csh
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• src/utils/qa/weeklybld/doNewReview2.csh
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