All File Changes

v387_preview to v387_preview2 (2019-08-19 to 2019-08-26) v387

• confs/rr.hg.conf
  • lines changed 17, context: html, text, full: html, text
    12d78f7390aa02fd2073dddee95abda9b4ca0b96 Sun Aug 25 01:11:35 2019 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgGene/domains.c
  • lines changed 4, context: html, text, full: html, text
    fcb3971566d6570959c4cd8022972d8f7c455ebc Mon Aug 19 13:21:18 2019 -0700
    Remove links to lssnp from dbSnp hgc pages, and change lssnp links to mupit on hgGene pages, refs #22953
• src/hg/hgTracks/hgTracks.c
  • lines changed 7, context: html, text, full: html, text
    692065227f9b0f987144c4608ffd6c31ce2af35d Mon Jul 29 17:45:05 2019 -0700
    Add support for styling submit buttons to indicate if they have been pressed (in modal mode). Do this for reverse and multi-region buttons on hgTracks. refs #23922
  • lines changed 1, context: html, text, full: html, text
    54c94c0537be6079976376847328793b95c1a2b5 Mon Aug 19 14:50:46 2019 -0700
    Removed excess <td> anchor from CR refs #24017
  • lines changed 0, context: html, text, full: html, text
    e00b9ef6442060c7df35e529bbe3fd0b4fc2ba90 Mon Aug 19 16:24:01 2019 -0700
    Forgot to add a styling space from CR refs #24017
  • lines changed 3, context: html, text, full: html, text
    378c5348de042d31ab26fe0a738f4a53b2977368 Wed Aug 21 11:19:10 2019 -0700
    Minor cleanup
• src/hg/hgc/hgc.c
  • lines changed 62, context: html, text, full: html, text
    fcb3971566d6570959c4cd8022972d8f7c455ebc Mon Aug 19 13:21:18 2019 -0700
    Remove links to lssnp from dbSnp hgc pages, and change lssnp links to mupit on hgGene pages, refs #22953
  • lines changed 25, context: html, text, full: html, text
    e67106d5cf1204021cada70c1ca43a92bd3b346d Wed Aug 21 16:54:25 2019 -0700
    Adding links to dbSnp hgc pages if the position is supported over at MuPIT, refs #24020
• src/hg/hgc/interactClick.c
  • lines changed 3, context: html, text, full: html, text
    46a8d03e29084edd8e716abc5558c857f98cabc5 Mon Jul 29 15:31:30 2019 -0700
    Increase padding (feedback from GB meeting). refs #22422
  • lines changed 1, context: html, text, full: html, text
    2ad6d72b6f9b737b3c7045601cc4be9efe28b1d9 Fri Aug 23 10:22:35 2019 -0700
    More padding around custom BED regions on interact multi-region link. Input from GB meeting. refs #24037
  • lines changed 146, context: html, text, full: html, text
    95ac3b9a9a4696a6ff59dc4dc8cb057b6a43c898 Fri Aug 23 16:10:24 2019 -0700
    Add multi-region link for all regions in interact cluster. refs #24037
  • lines changed 38, context: html, text, full: html, text
    f63b1478bc72ff9660027eb7b9d0db41529eba8b Sun Aug 25 19:11:02 2019 -0700
    Fix merge conflict
• src/hg/htdocs/goldenPath/history.html
  • lines changed 31, context: html, text, full: html, text
    8e73439c3de6d6560d50b267be0ba4016cc40f86 Mon Aug 19 14:43:06 2019 -0700
    Adding a Table of Contents for the history page, refs #20314
  • lines changed 8, context: html, text, full: html, text
    da9d20019b8237cc0d3fa8bc79f49e0bb1a3e2c8 Mon Aug 19 15:55:23 2019 -0700
    Using the getTrackReferences script to generate the proper styling for the ENCODE paper for the history.html page, refs #20314
  • lines changed 4, context: html, text, full: html, text
    451a83e7cfa9ee06c2d32d6fc7c2bbcfbe0aed84 Wed Aug 21 09:54:49 2019 -0700
    Capitalizing the titles on the history page, refs #20314
  • lines changed 7, context: html, text, full: html, text
    fa9d73fcd0c92300ccabbbfb70576da3ca812f75 Wed Aug 21 16:01:33 2019 -0700
    Rewording a paragraph on the history.html from Lou's code reveiw, refs #20314
  • lines changed 26, context: html, text, full: html, text
    9d823a73e36bed01e7455b833d4f246911abc41b Thu Aug 22 13:32:54 2019 -0700
    Adding more edits from Lou's code review, refs #24018
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 2, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
  • lines changed 48, context: html, text, full: html, text
    eab458fb9e14a1e11f3f0f8a8e1cfe5e3215b48e Wed Aug 21 15:40:35 2019 -0700
    Release announcement for VGP reds #23734
• src/hg/htdocs/inc/gbFooter.html
  • lines changed 2, context: html, text, full: html, text
    37009aa2a5d31a0093401540f402992ddd122345 Mon Aug 19 16:55:25 2019 -0700
    adding googleAnalytics to static pages
  • lines changed 1, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
• src/hg/htdocs/inc/gbFooterHardcoded.html
  • lines changed 1, context: html, text, full: html, text
    37009aa2a5d31a0093401540f402992ddd122345 Mon Aug 19 16:55:25 2019 -0700
    adding googleAnalytics to static pages
  • lines changed 1, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
• src/hg/htdocs/inc/gbsFooter.html
  • lines changed 5, context: html, text, full: html, text
    37009aa2a5d31a0093401540f402992ddd122345 Mon Aug 19 16:55:25 2019 -0700
    adding googleAnalytics to static pages
  • lines changed 1, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
• src/hg/htdocs/inc/googleAnalytics.html
  • lines changed 9, context: html, text, full: html, text
    37009aa2a5d31a0093401540f402992ddd122345 Mon Aug 19 16:55:25 2019 -0700
    adding googleAnalytics to static pages
• src/hg/htdocs/inc/jWestFooter.html
  • lines changed 3, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    eab458fb9e14a1e11f3f0f8a8e1cfe5e3215b48e Wed Aug 21 15:40:35 2019 -0700
    Release announcement for VGP reds #23734
• src/hg/htdocs/makefile
  • lines changed 1, context: html, text, full: html, text
    dbccb3494beb352ff8031fadd376306f59a15dc6 Mon Aug 19 18:13:21 2019 -0700
    Add googleAnalytics calls to static page footers. fixes #23969
  • lines changed 1, context: html, text, full: html, text
    6cd12075d8151e9b2fa1f83f9bf530ad7a185fe6 Wed Aug 21 09:57:02 2019 -0700
    Although I wanted --perms to get the execute bit correctly updated on the SSI html files, Hiram says it interacts badly with the group sticky bit which is on /usr/local/apache/htdocs
  • lines changed 1, context: html, text, full: html, text
    2d7a24a1cfff5abe1ad155b93b9e98f26f8bef2a Wed Aug 21 12:37:23 2019 -0700
    adding --whole-file to rsync will make it so that the user owns the new file and therefore when it changes, it should get fresh more likely correct perms and time
• src/hg/htdocs/style/HGStyle.css
  • lines changed 10, context: html, text, full: html, text
    746367a74647e88e2c6029f30a403589b97247c8 Mon Jul 29 16:46:36 2019 -0700
    Add styling for pressed button on hgTracks. refs #23922
  • lines changed 1, context: html, text, full: html, text
    c75cad43cd95a0d10f5586a1e7df2e3717993574 Mon Jul 29 18:00:54 2019 -0700
    Lighten appearance of text on pressed buttons. refs #23922
  • lines changed 1, context: html, text, full: html, text
    fdc9420705b134d6daf6675767b1bc4d05f8c9e4 Wed Aug 21 11:18:36 2019 -0700
    Lower red component, as per JK. refs #23922
  • lines changed 1, context: html, text, full: html, text
    1d173842a1256c9777500adb4eb570840ebf377b Wed Aug 21 11:28:05 2019 -0700
    Remove cut/paste err.
• src/hg/htdocs/training/index.html
  • lines changed 2, context: html, text, full: html, text
    6d652c16caf04024511492cba03cd8b9dfc3ec17 Wed Aug 21 14:16:32 2019 -0700
    fixing link that moved for the Hutch, putting i better link to Ghana workshop
• src/hg/inc/hPrint.h
  • lines changed 5, context: html, text, full: html, text
    692065227f9b0f987144c4608ffd6c31ce2af35d Mon Jul 29 17:45:05 2019 -0700
    Add support for styling submit buttons to indicate if they have been pressed (in modal mode). Do this for reverse and multi-region buttons on hgTracks. refs #23922
• src/hg/lib/hPrint.c
  • lines changed 18, context: html, text, full: html, text
    692065227f9b0f987144c4608ffd6c31ce2af35d Mon Jul 29 17:45:05 2019 -0700
    Add support for styling submit buttons to indicate if they have been pressed (in modal mode). Do this for reverse and multi-region buttons on hgTracks. refs #23922
• src/hg/lib/lsSnpPdbChimera.c
  • lines changed 16, context: html, text, full: html, text
    fcb3971566d6570959c4cd8022972d8f7c455ebc Mon Aug 19 13:21:18 2019 -0700
    Remove links to lssnp from dbSnp hgc pages, and change lssnp links to mupit on hgGene pages, refs #22953
• src/hg/makeDb/doc/hg38/mupit.txt
  • lines changed 75, context: html, text, full: html, text
    e67106d5cf1204021cada70c1ca43a92bd3b346d Wed Aug 21 16:54:25 2019 -0700
    Adding links to dbSnp hgc pages if the position is supported over at MuPIT, refs #24020
• src/hg/makeDb/doc/mm10.txt
  • lines changed 5, context: html, text, full: html, text
    fe2d1d757565d0141b91e6c6856a8fcf06579a3f Mon Aug 19 13:20:13 2019 -0700
    note copy and paste error in file name construction for phyloP60way download files #21388
• src/hg/makeDb/trackDb/human/clinvar.html
  • lines changed 9, context: html, text, full: html, text
    6b4f1b0a4fb33ae0af9c930dbf479497f7b07593 Wed Aug 21 02:52:48 2019 -0700
    adding note about missing chrM annotations on clinvar hg19 to clinvar docs page, result of email from Conner
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.ra
  • lines changed 2, context: html, text, full: html, text
    dc2fe877d85425f80fcaeaee1f771b5db80e8de6 Fri Aug 23 12:43:08 2019 -0700
    change the name of the GDC Cancer track to TCGA Pan-Cancer
• src/hg/makeDb/trackDb/human/trackDb.geneHancer.ra
  • lines changed 13, context: html, text, full: html, text
    a694567dda0bb84de3a942fe7bc4b73178fb1738 Fri Aug 23 16:14:15 2019 -0700
    Add multiRegion link to Genehancer clusters view. refs #24037
• src/hg/utils/automation/xenoRefGeneIx.pl
  • lines changed 1, context: html, text, full: html, text
    6309f5897de402d8b79b291054f246f9fec1bc1e Mon Aug 19 15:46:07 2019 -0700
    correctly account for name2 index refs #24008
• src/hg/utils/hubCheck/hubCheck.c
  • lines changed 13, context: html, text, full: html, text
    8b082486b066550bbfa17055e7e557f00585df2f Fri Aug 23 15:58:41 2019 -0700
    hubCheck complains about multiWigs with only one subtrack, refs #13428
• src/inc/cheapcgi.h
  • lines changed 6, context: html, text, full: html, text
    692065227f9b0f987144c4608ffd6c31ce2af35d Mon Jul 29 17:45:05 2019 -0700
    Add support for styling submit buttons to indicate if they have been pressed (in modal mode). Do this for reverse and multi-region buttons on hgTracks. refs #23922
• src/lib/cheapcgi.c
  • lines changed 33, context: html, text, full: html, text
    de8b34888c05286580bd64896d14c843512fd4fe Mon Jul 29 16:47:07 2019 -0700
    Refactoring duplicated submit button code, readying it for adding style for pressed button. refs #23922
  • lines changed 10, context: html, text, full: html, text
    692065227f9b0f987144c4608ffd6c31ce2af35d Mon Jul 29 17:45:05 2019 -0700
    Add support for styling submit buttons to indicate if they have been pressed (in modal mode). Do this for reverse and multi-region buttons on hgTracks. refs #23922
• src/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    7c004ef9a75f9fb435da42ec5188c6e6770ab0c2 Wed Aug 21 16:29:50 2019 -0700
    moving dnsInfo to UCSC dirs - now uses handy getaddrinfo and behaves like our net.c and CGIs in resolving dns names.

• lines changed: 694
• files changed: 50