File Changes for hiram

v396_preview2 to v396_base (2020-03-23 to 2020-03-30) v396

• src/hg/lib/asmEquivalent.as
  • lines changed 11, context: html, text, full: html, text
    c36eab92d8a9d8cdfd5b7a782b097a3e6f638441 Mon Mar 23 18:53:36 2020 -0700
    hgFixed.asmEquivalent table definition refs #21074
  • lines changed 3, context: html, text, full: html, text
    8479716afe2a31901141de47a23bcddf06325fa3 Thu Mar 26 17:28:55 2020 -0700
    unsigned int is a poor choice for numbers that need to have operations such as subtraction on them, MySQL keeps everything in unsigned int and is confused by negative results refs #21074
• src/hg/lib/asmEquivalent.c
  • lines changed 255, context: html, text, full: html, text
    8479716afe2a31901141de47a23bcddf06325fa3 Thu Mar 26 17:28:55 2020 -0700
    unsigned int is a poor choice for numbers that need to have operations such as subtraction on them, MySQL keeps everything in unsigned int and is confused by negative results refs #21074
• src/hg/lib/asmEquivalent.h
  • lines changed 101, context: html, text, full: html, text
    8479716afe2a31901141de47a23bcddf06325fa3 Thu Mar 26 17:28:55 2020 -0700
    unsigned int is a poor choice for numbers that need to have operations such as subtraction on them, MySQL keeps everything in unsigned int and is confused by negative results refs #21074
• src/hg/lib/asmEquivalent.sql
  • lines changed 18, context: html, text, full: html, text
    c36eab92d8a9d8cdfd5b7a782b097a3e6f638441 Mon Mar 23 18:53:36 2020 -0700
    hgFixed.asmEquivalent table definition refs #21074
  • lines changed 3, context: html, text, full: html, text
    8479716afe2a31901141de47a23bcddf06325fa3 Thu Mar 26 17:28:55 2020 -0700
    unsigned int is a poor choice for numbers that need to have operations such as subtraction on them, MySQL keeps everything in unsigned int and is confused by negative results refs #21074
• src/hg/makeDb/doc/asmHubs/mkAsmStats.pl
  • lines changed 36, context: html, text, full: html, text
    dff254260c6b5cb3ab0f2257775fce47bbbfa3ea Wed Mar 25 11:56:34 2020 -0700
    now staging on hgdownload.soe.ucsc.edu refs #24748
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
  • lines changed 24, context: html, text, full: html, text
    dff254260c6b5cb3ab0f2257775fce47bbbfa3ea Wed Mar 25 11:56:34 2020 -0700
    now staging on hgdownload.soe.ucsc.edu refs #24748
• src/hg/makeDb/doc/asmHubs/trackData.pl
  • lines changed 51, context: html, text, full: html, text
    dff254260c6b5cb3ab0f2257775fce47bbbfa3ea Wed Mar 25 11:56:34 2020 -0700
    now staging on hgdownload.soe.ucsc.edu refs #24748
• src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh
  • lines changed 46, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/README.txt
  • lines changed 193, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/allByAll.sh
  • lines changed 37, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/createNearMissRunList.pl
  • lines changed 68, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/exact.sh
  • lines changed 39, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/exactTableTsv.pl
  • lines changed 56, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547
• src/hg/makeDb/doc/assemblyEquivalence/runOne
  • lines changed 90, context: html, text, full: html, text
    199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
    adding some of the scripts that do the comparisons refs #24547