Commits for hiram
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v396_preview2 to v396_base (2020-03-23 to 2020-03-30) v396
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c36eab92d8a9d8cdfd5b7a782b097a3e6f638441 Mon Mar 23 18:53:36 2020 -0700
- hgFixed.asmEquivalent table definition refs #21074
- src/hg/lib/asmEquivalent.as - lines changed 11, context: html, text, full: html, text
- src/hg/lib/asmEquivalent.sql - lines changed 18, context: html, text, full: html, text
dff254260c6b5cb3ab0f2257775fce47bbbfa3ea Wed Mar 25 11:56:34 2020 -0700
- now staging on hgdownload.soe.ucsc.edu refs #24748
- src/hg/makeDb/doc/asmHubs/mkAsmStats.pl - lines changed 36, context: html, text, full: html, text
- src/hg/makeDb/doc/asmHubs/mkHubIndex.pl - lines changed 24, context: html, text, full: html, text
- src/hg/makeDb/doc/asmHubs/trackData.pl - lines changed 51, context: html, text, full: html, text
8479716afe2a31901141de47a23bcddf06325fa3 Thu Mar 26 17:28:55 2020 -0700
- unsigned int is a poor choice for numbers that need to have operations such as subtraction on them, MySQL keeps everything in unsigned int and is confused by negative results refs #21074
- src/hg/lib/asmEquivalent.as - lines changed 3, context: html, text, full: html, text
- src/hg/lib/asmEquivalent.c - lines changed 255, context: html, text, full: html, text
- src/hg/lib/asmEquivalent.h - lines changed 101, context: html, text, full: html, text
- src/hg/lib/asmEquivalent.sql - lines changed 3, context: html, text, full: html, text
199b2d4113d9498515030061888af66cbf7e8246 Thu Mar 26 17:40:17 2020 -0700
- adding some of the scripts that do the comparisons refs #24547
- src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh - lines changed 46, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/README.txt - lines changed 193, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/allByAll.sh - lines changed 37, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/createNearMissRunList.pl - lines changed 68, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/exact.sh - lines changed 39, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/exactTableTsv.pl - lines changed 56, context: html, text, full: html, text
- src/hg/makeDb/doc/assemblyEquivalence/runOne - lines changed 90, context: html, text, full: html, text
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