All File Changes

v401_preview to v401_preview2 (2020-06-29 to 2020-07-06) v401

• confs/hgwbeta.hg.conf
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    b7a9485e0c1f49f1ec871785a3fe0cecb4b88c25 Sun Jul 5 01:11:42 2020 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/genePredToGtf/genePredToGtf.c
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    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/genePredToGtf/tests/expected/basicSimpleTest.gtf
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    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/genePredToGtf/tests/expected/basicTest.gtf
  • lines changed 86, context: html, text, full: html, text
    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/genePredToGtf/tests/expected/honorTest.gtf
  • lines changed 104, context: html, text, full: html, text
    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/genePredToGtf/tests/expected/utrSimpleTest.gtf
  • lines changed 91, context: html, text, full: html, text
    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/genePredToGtf/tests/expected/utrTest.gtf
  • lines changed 102, context: html, text, full: html, text
    148cd685553c26bb02f7d6e9cde931a153faa7d8 Tue Jun 30 14:12:33 2020 -0700
    now correctly numbering reverse strand exons refs #25379
• src/hg/hgGene/gencodeSection.c
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgGene/gencodeSection.h
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgGene/hgGene.c
  • lines changed 3, context: html, text, full: html, text
    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgGene/hgGene.h
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgGene/hgGeneData/section.ra
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgGene/makefile
  • lines changed 1, context: html, text, full: html, text
    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
• src/hg/hgHubConnect/hgHubConnect.c
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    7302f9df405d8697c5a050c03bc148218e80dc11 Tue Jun 30 12:40:03 2020 -0700
    Updating documentation #25805
• src/hg/hgTables/bigBed.c
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    10013c858ac5cffd9b27ce28f401b96ac4031863 Mon Jun 29 15:07:09 2020 -0700
    if trackDb has specific a "table" line, use that and don't look for a bigBed in bigDataUrl
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    1793baa994b25678b511ccfcdc1410cedf1a7d8d Tue Jun 30 16:14:13 2020 -0700
    Revert "if trackDb has specific a "table" line, use that and don't look for a" This reverts commit 10013c858ac5cffd9b27ce28f401b96ac4031863.
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    cf6a9e74cf9c651774984781fc0232a7132db576 Wed Jul 1 09:10:55 2020 -0700
    if "table" is explicitly listed, we're going to use that instead of any bigDataUrl
• src/hg/hgTables/mainPage.c
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    bb387695e50d89c25fa23e687ed64e7c55b257e0 Fri Jul 3 05:51:33 2020 -0700
    leftover debug statement found by Angie, refs #25810
• src/hg/hgTracks/vcfTrack.c
  • lines changed 36, context: html, text, full: html, text
    dfcc30cdb7e4d1afe1ea106162e294791eb64e76 Mon Jun 29 16:54:03 2020 -0700
    Fix 'trio' ordering bug when there is only one parent and we are drawing in child,parent order, refs #25813
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    2e50ce74d75b4e6a6de48f143a3e9624c8cabedc Wed Jul 1 16:22:15 2020 -0700
    Always highlight child in a trio in yellow, somehow lost this code when merging branches, refs #25582
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
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    7302f9df405d8697c5a050c03bc148218e80dc11 Tue Jun 30 12:40:03 2020 -0700
    Updating documentation #25805
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 47, context: html, text, full: html, text
    47c2e6cf8f6b2e3bc0336cb378c41993b304ba19 Thu Jul 2 11:05:54 2020 -0700
    adding links and announcement to new video. changing workshop schedule accommodate more cancellations and virtualizations
  • lines changed 2, context: html, text, full: html, text
    fdb1e2853460b3341546f14a1651bebf860a0f9f Thu Jul 2 11:19:31 2020 -0700
    making shorter url to video
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    123f6fbd71d0f56fd7be02b3c5ec19a62332470c Thu Jul 2 11:27:12 2020 -0700
    making shorter url to video
• src/hg/htdocs/images/hubDevelopment.png
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    34161cca9255d31c77a48e5349a820f2dba2a773 Tue Jun 30 12:42:57 2020 -0700
    Adding image #25805
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    47c2e6cf8f6b2e3bc0336cb378c41993b304ba19 Thu Jul 2 11:05:54 2020 -0700
    adding links and announcement to new video. changing workshop schedule accommodate more cancellations and virtualizations
• src/hg/htdocs/training/index.html
  • lines changed 53, context: html, text, full: html, text
    47c2e6cf8f6b2e3bc0336cb378c41993b304ba19 Thu Jul 2 11:05:54 2020 -0700
    adding links and announcement to new video. changing workshop schedule accommodate more cancellations and virtualizations
• src/hg/hubApi/getData.c
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    a688821c6fc714f05ecd4459d964e6858a7f5c54 Fri Jul 3 11:53:38 2020 -0700
    must have chrom= on SQL statements when getting a full table refs #25840
• src/hg/hubApi/tests/expected/list03.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/list09.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/redmine25840.gz
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    608044d23640516fd06338d04d98960048699b07 Mon Jul 6 08:59:20 2020 -0700
    adding list/schema tests and redmine25840 refs #25840
• src/hg/hubApi/tests/expected/test0.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/test19.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/test27.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/test41.gz
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    36612e75f9f92facd83a237d543e2eea2d1aac94 Mon Jul 6 09:48:35 2020 -0700
    bring expected up to date with new data contents no redmine
• src/hg/hubApi/tests/expected/test42.gz
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    8ab8f8939ea13c9aa2190f2bb52516c6521dbc8f Mon Jul 6 09:45:00 2020 -0700
    fixing redmine25840 also fixed this test42 refs #25840
• src/hg/hubApi/tests/expected/test8.gz
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    4b7cccd4848bd579564403688f065f551fdb3924 Mon Jul 6 09:38:21 2020 -0700
    fixing redmine25840 also fixed this test8 refs #25840
• src/hg/hubApi/tests/jsonConsumer.pl
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    608044d23640516fd06338d04d98960048699b07 Mon Jul 6 08:59:20 2020 -0700
    adding list/schema tests and redmine25840 refs #25840
• src/hg/hubApi/tests/makefile
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    608044d23640516fd06338d04d98960048699b07 Mon Jul 6 08:59:20 2020 -0700
    adding list/schema tests and redmine25840 refs #25840
• src/hg/js/hgTracks.js
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    5d86f984674affd2260f4555a9586c9026bf3e09 Tue Jun 30 01:39:59 2020 -0700
    moving timing messages under hgTracks image, refs #25805
• src/hg/lib/gencodeBGP.as
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    beded063af0162677da2324db2f15ac8ada64936 Fri Jul 3 17:26:50 2020 -0700
    add tiers to gencode file.. fix up filters.
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    d5cdbbb51198d600fa48ccb13045e0f96fe45ab0 Sat Jul 4 08:33:37 2020 -0700
    give this structure a better name
• src/hg/lib/hui.c
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    beded063af0162677da2324db2f15ac8ada64936 Fri Jul 3 17:26:50 2020 -0700
    add tiers to gencode file.. fix up filters.
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    ceb57b4c14032bbba368796177103a468a078871 Fri Jul 3 18:05:47 2020 -0700
    oops... broke highlightby in filterBy statements
• src/hg/lib/vcfUi.c
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    5f5b72d8ea8afcaf45d87c9cd1024c65edcee108 Thu Jul 2 12:20:43 2020 -0700
    Change some checkbox labels and add an info icon for phased trio display, refs #25582
• src/hg/makeDb/doc/droSim2/initialBuild.txt
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    71250d609029a99f76dda0869838ba9fff9fbbd7 Wed Jul 1 10:53:01 2020 -0700
    chainNet droSim2 vs. droSec1 per user request refs #134764
• src/hg/makeDb/doc/perManBai1/initialBuild.sh
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    2124c0c0e1b0fd852f6078625627742252405af6 Mon Jun 29 10:08:47 2020 -0700
    started build then became obsolete refs #23111
• src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
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    beded063af0162677da2324db2f15ac8ada64936 Fri Jul 3 17:26:50 2020 -0700
    add tiers to gencode file.. fix up filters.
• src/hg/makeDb/doc/wuhCor1/phylogenetics.txt
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    4ea4228eedf7f6415e01087063290f69c7ec8fb9 Tue Jun 30 13:06:55 2020 -0700
    makeDb/doc for Lab Associated Mutations track (& possibly future tracks associated w/work with David, Russ et al.). refs #25804
• src/hg/makeDb/doc/wuhCor1/rapid.txt
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    25d352628c6f0dbe93495d01b5527761edc05b79 Mon Jul 6 07:51:56 2020 -0700
    adding RAPID primers track, refs #25847
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
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    5d7afd9fc0ac9f7ae8bafe87c7d7c28bad168d5a Fri Jul 3 16:36:27 2020 -0700
    Turning on GenBank updates for new assembly #25279
• src/hg/makeDb/trackDb/bats/rouAeg1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/birds/ficAlb1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/cat/felCat8/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/chainNet.html
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    a1691f6b23c5406023f8743fe131af96c5539f18 Wed Jul 1 12:40:32 2020 -0700
    correct Bob Harris reference for lastz refs #25827
• src/hg/makeDb/trackDb/chicken/galGal5/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/chimp/panTro5/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/chinchilla/chiLan1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/drosophila/droPer1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/fugu/fr3/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/gator/allMis1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/human/hg38/encodeCcreCombined.html
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    29981f8cc1786bec09be67dc0ace8c8d44a9c82f Tue Jun 30 10:36:39 2020 -0700
    Fixing data access section in response to MLQ refs #25819
• src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra
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    e22f12e30ffc45d4b6657aeca878a22eeb239edd Thu Jul 2 16:05:42 2020 -0700
    add gencode transcript details to hgGene
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    beded063af0162677da2324db2f15ac8ada64936 Fri Jul 3 17:26:50 2020 -0700
    add tiers to gencode file.. fix up filters.
• src/hg/makeDb/trackDb/human/omimGene2.html
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    4fde51d367a488060e18e0e19d18a2594915ae76 Thu Jul 2 14:59:11 2020 -0700
    corrected typo in description refs #25815
• src/hg/makeDb/trackDb/human/trackDb.dbVar.ra
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    181407cccdc208bb3ff3d0dd7caa8c252638af5b Thu Jul 2 11:07:05 2020 -0700
    Add 'Common' to dbVar labels after feedback from NCBI
• src/hg/makeDb/trackDb/kangarooRat/dipOrd2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/macaca/macNem1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/mammal/fukDam1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/micOch/micOch1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/mouse/mm10/encodeCcreCombined.html
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    29981f8cc1786bec09be67dc0ace8c8d44a9c82f Tue Jun 30 10:36:39 2020 -0700
    Fixing data access section in response to MLQ refs #25819
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra
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    ee8ccbdc5c25c9ac877293777c3c0272f78afd14 Fri Jul 3 17:32:45 2020 -0700
    adding panPan3 chainNet refs #25720
• src/hg/makeDb/trackDb/mouseLemur/micMur2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/mouseLemur/micMur3/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/oldWorldMonkeys/colAng1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/oreNil/oreNil2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/otters/enhLutKen1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/poeRet/poeRet1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/primate/aotNan1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/primate/cebCap1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/primate/cerAty1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/primate/manLeu1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/primate/proCoq1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/rhesus/rheMac8/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/rhinopithecus/rhiBie1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/rhinopithecus/rhiRox1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/sheep/oviAri3/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/sheep/oviAri4/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/tenrec/echTel2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/treeShrew/tupChi1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/turkey/melGal5/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/turtle/chrPic2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/virus/wuhCor1/PhyloCSF_smooth.html
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    8801c970884d32459d8022e8f320c453ffa1351d Mon Jun 29 17:33:56 2020 -0700
    Removing quotes for CR #25816
• src/hg/makeDb/trackDb/virus/wuhCor1/kimIvtCov.html
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    4e294a62f41cf6daeff0b5838e4e1e7f0d520543 Wed Jul 1 13:38:05 2020 -0700
    Making each line less than 100 characters, refs #25708
• src/hg/makeDb/trackDb/virus/wuhCor1/labAssocMutsNs419.html
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    e5c6f18f27f281859799da75394c7ed7c8b573eb Tue Jun 30 13:03:04 2020 -0700
    Change bigDataUrl for labAssocMutsNs419 in anticipation of getting new & improved results in the future. refs #25804
• src/hg/makeDb/trackDb/virus/wuhCor1/phylocsf.ra
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    7c0e2bc5b92454ec727b0977054d108302701e51 Mon Jun 29 13:44:08 2020 -0700
    Changing default visibility settings #25644
• src/hg/makeDb/trackDb/virus/wuhCor1/rapid.html
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    0a734e51f328eb18c328de4eed63ed6cb9926add Mon Jul 6 07:56:12 2020 -0700
    Adding more docs for primer rapid set, refs #25847
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
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    e5c6f18f27f281859799da75394c7ed7c8b573eb Tue Jun 30 13:03:04 2020 -0700
    Change bigDataUrl for labAssocMutsNs419 in anticipation of getting new & improved results in the future. refs #25804
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    25d352628c6f0dbe93495d01b5527761edc05b79 Mon Jul 6 07:51:56 2020 -0700
    adding RAPID primers track, refs #25847
• src/hg/makeDb/trackDb/whale/orcOrc1/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.ra
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    580f3b71e41c2387325ed01b5cf0ea3e5190452e Wed Jul 1 11:08:56 2020 -0700
    Removing release tags from NCBI tracks, they were an oversight in their original release refs #24547
• src/hg/utils/automation/doBlastzChainNet.pl
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    a1691f6b23c5406023f8743fe131af96c5539f18 Wed Jul 1 12:40:32 2020 -0700
    correct Bob Harris reference for lastz refs #25827
• src/hg/utils/otto/clinGen/processClinGenCnv.py
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    34b96568359c6125704a1eb7455dd39e99744a72 Thu Jul 2 10:36:03 2020 -0700
    Fix up the ClinGen Dosage and CNV colors and mouseovers, refs #24818,#25562
• src/hg/utils/otto/clinGen/processClinGenDosage.py
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    3684310aca6ed1ad61468676c28a7dac37e4af59 Wed Jul 1 09:27:40 2020 -0700
    Make clingen dosage otto job more resilient to poorly formatted downloads
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    34b96568359c6125704a1eb7455dd39e99744a72 Thu Jul 2 10:36:03 2020 -0700
    Fix up the ClinGen Dosage and CNV colors and mouseovers, refs #24818,#25562
• src/lib/asParse.c
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    1e52f61174270e7af9883502f46935bce628f628 Fri Jul 3 16:48:28 2020 -0700
    can use octothorp to comment in AS files
• src/utils/qa/weeklybld/buildEnv.csh
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    7f33e6039d10ec3a4451aeda01d4cd15623b9b49 Mon Jul 6 09:51:30 2020 -0700
    v401 preview2
• src/utils/userApps/mkREADME.sh
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    4502682efadb379bc5b3854d4d181b1835e3b88d Fri Jul 3 02:10:17 2020 -0700
    fixing README file creator, refs #25071

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