Commits for hiram

v402_preview2 to v402_base (2020-07-27 to 2020-08-03) v402

6d3777492e0787c25dee9d0dfe52c7585ee1382b Mon Jul 27 13:04:13 2020 -0700

• adding mm39 to the browser refs #22271
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/gap.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/gold.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 8, context: html, text, full: html, text

c6142e28bc43936027fcfa20acdea1cbf6b99209 Mon Jul 27 15:27:42 2020 -0700

• begin build of mm39 refs #22271
  • src/hg/makeDb/doc/mm39/initialBuild.txt - lines changed 1199, context: html, text, full: html, text

a7986965ab5a0778cc4784339c5250eb55deaa61 Mon Jul 27 16:04:02 2020 -0700

• adding search rule for gold/assembly track refs #22271
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 6, context: html, text, full: html, text

b4c1647f1ae2f77b8657427712609730a9da81fa Tue Jul 28 11:15:01 2020 -0700

• done and in pushQ refs #24524
  • src/hg/makeDb/doc/gorGor6/initialBuild.txt - lines changed 164, context: html, text, full: html, text

c6768809fed768591851aa1547d1f5e867727a2f Wed Jul 29 12:41:26 2020 -0700

• liftOvers from canFam5 to Fam3 Fam4 and vs. vs. refs #25917
  • src/hg/makeDb/doc/canFam3.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/canFam4/initialBuild.txt - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/canFam5/initialBuild.txt - lines changed 131, context: html, text, full: html, text

8d2d04a5414fc413cdf188edfa3e9ee26a597d79 Wed Jul 29 13:36:49 2020 -0700

• Added canFam5 dog; refs #25917
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 18, context: html, text, full: html, text

087aaa0dd2c433c5da4280b808759aca82695634 Wed Jul 29 13:37:45 2020 -0700

• Added canFam5 - dog refs #25917
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text

52b68e67791a212a38b70eb97d16cbd946d5631f Wed Jul 29 13:41:15 2020 -0700

• adding rules for canFam5 refs #25917
  • src/hg/makeDb/schema/all.joiner - lines changed 8, context: html, text, full: html, text

ba89366e6b1e0c1eb357a9d67bf978fa59612ffc Thu Jul 30 10:04:35 2020 -0700

• Added mm39 mouse; refs #22271
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 20, context: html, text, full: html, text

0dbf36fe5ceb398640c5fa2b64022bcbe4d2147e Thu Jul 30 10:05:25 2020 -0700

• Added mm39 - mouse refs #22271
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text

74c7146bcbc72e8ab3c719d2edd4ec53c25f21ae Thu Jul 30 10:24:14 2020 -0700

• adding rules for mm39 refs #22271
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text

f6bb7fb8b0af020a2d602824f74d84d516bd96fb Thu Jul 30 15:12:36 2020 -0700

• liftOver mm10 to mm39 to mm10 completed refs #22271
  • src/hg/makeDb/doc/mm10.txt - lines changed 89, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/initialBuild.txt - lines changed 292, context: html, text, full: html, text

b4dc79691dba0b82c4253ce9bc9baeb1ce2156fe Fri Jul 31 12:37:27 2020 -0700

• Added canFam5 dog; refs #25917
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text

a3c6c2219eb01d33cb88b8a58c7e8db9606191b2 Fri Jul 31 13:17:49 2020 -0700

• try out a xenoRefGene track refs #22271
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/xenoRefGene.html - lines changed 90, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/xenoRefGene.ra - lines changed 12, context: html, text, full: html, text

d777e352913f691aaa106669ed4a6e660e8ea6e4 Fri Jul 31 13:19:41 2020 -0700

• try out a xenoRefGene track refs #22271
  • src/hg/makeDb/trackDb/mouse/mm39/xenoRefGene.html - lines changed 1, context: html, text, full: html, text

d8d08237bc1285af4c37bb0ca0ce402db95a950d Fri Jul 31 13:46:04 2020 -0700

• can not use the track name xenoRefGene refs #22271
  • src/hg/makeDb/trackDb/mouse/mm39/xenoRefGene.ra - lines changed 1, context: html, text, full: html, text