Commits for braney

v401_base to v402_preview (2020-07-13 to 2020-07-20) v402

62746b4dd3909b50dce1928ca75d3ba8316f83e6 Tue Jul 14 15:42:46 2020 -0700

• changes from user Sergej Nowoshilow on github
  • src/hg/lib/genePred.c - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/gtfToGenePred/gtfToGenePred.c - lines changed 1, context: html, text, full: html, text
  • src/inc/gff.h - lines changed 4, context: html, text, full: html, text
  • src/lib/gff.c - lines changed 8, context: html, text, full: html, text

553e456f9d78c07964df4c42af62d7480b7a55a6 Wed Jul 15 08:30:40 2020 -0700

• oops... a place I missed that references gff.h.
  • src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c - lines changed 1, context: html, text, full: html, text

d57e88e244a6f7372791a93f52b1f4b1628801ff Wed Jul 15 08:38:34 2020 -0700

• oops.. another place that references gff.h
  • src/hg/lib/tests/genePredTester.c - lines changed 1, context: html, text, full: html, text

ccaa3ea70462cde244d79b856f2b5738b359b5a1 Wed Jul 15 08:52:39 2020 -0700

• change Gencode to GENCODE in trackDb
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 16, context: html, text, full: html, text

11a82397d8d5c6d013cc62cdc99b84bc5506747e Fri Jul 17 12:55:23 2020 -0700

• ongoing work on the GENCODE merge
  • src/hg/hgSuggest/hgSuggest.c - lines changed 4, context: html, text, full: html, text
  • src/hg/inc/hdb.h - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 42, context: html, text, full: html, text
  • src/hg/lib/hgFind.c - lines changed 439, context: html, text, full: html, text
  • src/hg/lib/suggest.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV35.sh - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 77, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 7, context: html, text, full: html, text

ef268322c817e01ce0f59ee15fc1f4de0fcf16f3 Fri Jul 17 15:41:19 2020 -0700

• gencodeV35 should be off by default
  • src/hg/makeDb/trackDb/human/hg38/gencodeV35.ra - lines changed 1, context: html, text, full: html, text

78cc410bd49ff423bc96d004ac07219b509ae25e Mon Jul 20 10:03:38 2020 -0700

• v402 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text