All File Changes

v406_base to v407_preview (2020-10-26 to 2020-11-02) v407

• confs/hgwdev.hg.conf
  • lines changed 3, context: html, text, full: html, text
    60dd0bb61a4a5eafb9b9c6f275ac728bd0fe3cbb Sun Nov 1 01:11:52 2020 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgGateway/hgGateway.html
  • lines changed 1, context: html, text, full: html, text
    6c3a3d364f7467c9db4b7c0ea03a6ef05638d6db Mon Oct 26 10:45:19 2020 -0700
    Mention assembly accessions in watermark for speciesSearch as suggested by Hiram. refs #26081
  • lines changed 1, context: html, text, full: html, text
    9b4cca3aec5828e24155c52c2022c77b44ae1338 Thu Oct 29 09:55:04 2020 -0700
    Adding link to FAQ from gateway page for finding assemblies refs #26081
• src/hg/hgGene/hgGene.c
  • lines changed 8, context: html, text, full: html, text
    dc2c90bfb233f529dd7b81ba92777f72a4035290 Mon Nov 2 08:28:20 2020 -0800
    fixing hgGene refseq summary output, refs #26454
• src/hg/hgGene/malaCards.c
  • lines changed 1, context: html, text, full: html, text
    b423c90b39ca9b344a8dd63ad08fe3e19f2dcb93 Mon Nov 2 05:25:43 2020 -0800
    fixing malacards link, refs #26446
• src/hg/hgGene/sequence.c
  • lines changed 2, context: html, text, full: html, text
    f43bcb8fb4ae5a1c6ba6efec394fcdc1050e1ad8 Fri Oct 30 06:47:08 2020 -0700
    fix some bugs with getting sequence in hgNear and hgGene
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 1, context: html, text, full: html, text
    530625ce8e8a14ad1aa1d97845c72b6dea035cdb Wed Oct 28 15:14:45 2020 -0700
    don't create a score filter on a bigBed that doesn't have 5 or more bed fields
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    533583a421946922c86b82261adbde2c756004d8 Thu Oct 29 13:15:03 2020 -0700
    mouseOver.js code has moved into hgTracks.js refs #21980
  • lines changed 15, context: html, text, full: html, text
    dd675e620b195081c73d06b62f633c70eef7cf31 Thu Oct 29 13:56:28 2020 -0700
    mouseOver now enabled via hg.conf variable refs #21980
  • lines changed 15, context: html, text, full: html, text
    7f07969209248e6ad775df9417b9b185147c1cd2 Thu Oct 29 14:36:56 2020 -0700
    allow mouseOver to turn on and off via hg.conf variable refs #21980
• src/hg/hgTracks/simpleTracks.c
  • lines changed 87, context: html, text, full: html, text
    ee7bf25706a2e4140a940d4372125f1aa23aab14 Mon Oct 26 10:08:27 2020 -0700
    make OMiM mouseovers more useful
  • lines changed 3, context: html, text, full: html, text
    38ad24d8208f65f76d559f1c1c758dc6d9bf7723 Thu Oct 29 04:41:31 2020 -0700
    changing exon numbers default from on to off. refs #25325
• src/hg/hgTracks/wigTrack.c
  • lines changed 37, context: html, text, full: html, text
    77022fe69d73bf7488dedd6a7a0c5a9dea3e854a Tue Oct 27 14:16:26 2020 -0700
    appears to be working OK even in dynamic update move refs #21980
  • lines changed 11, context: html, text, full: html, text
    956931c1182aa23149d482f644f5d8a7626f489d Thu Oct 29 13:13:46 2020 -0700
    no longer need the secret MAP element to trigger mouseOver display refs #21980
  • lines changed 22, context: html, text, full: html, text
    7f07969209248e6ad775df9417b9b185147c1cd2 Thu Oct 29 14:36:56 2020 -0700
    allow mouseOver to turn on and off via hg.conf variable refs #21980
  • lines changed 4, context: html, text, full: html, text
    c2e38dac3089cb5e3cacc3cc9a66ed530f845870 Thu Oct 29 14:38:35 2020 -0700
    remove debug statements refs #21980
  • lines changed 1, context: html, text, full: html, text
    dbce21427e784f7f4bfef41d791082158c50d2ec Fri Oct 30 16:32:54 2020 -0700
    add a verticle line to indicate where on the graph the pointer is refs #21980
• src/hg/hgc/bigBedClick.c
  • lines changed 33, context: html, text, full: html, text
    bc6a803ab72e4c35c16af563b3e88c03ee1adb5c Mon Oct 26 12:10:29 2020 -0700
    Support bigBed extra fields substitutions in hgc URL link outs
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    bc6a803ab72e4c35c16af563b3e88c03ee1adb5c Mon Oct 26 12:10:29 2020 -0700
    Support bigBed extra fields substitutions in hgc URL link outs
• src/hg/hgc/hgc.h
  • lines changed 8, context: html, text, full: html, text
    bc6a803ab72e4c35c16af563b3e88c03ee1adb5c Mon Oct 26 12:10:29 2020 -0700
    Support bigBed extra fields substitutions in hgc URL link outs
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 41, context: html, text, full: html, text
    b6a0b575c8386f564ffd3b9086d538bc7f6d310b Mon Oct 26 14:24:43 2020 -0700
    Adding new FAQ entry about not finding assemblies on the GB refs #26081
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 3, context: html, text, full: html, text
    c0d9758b9b42bacf94b50b5b196a1754b3c1e6ae Wed Oct 28 14:41:57 2020 -0700
    Fixing lollipop spelling No RM
• src/hg/htdocs/style/makefile
  • lines changed 1, context: html, text, full: html, text
    7f07969209248e6ad775df9417b9b185147c1cd2 Thu Oct 29 14:36:56 2020 -0700
    allow mouseOver to turn on and off via hg.conf variable refs #21980
• src/hg/htdocs/style/mouseOver.css
  • lines changed 2, context: html, text, full: html, text
    9dc6d1c33adc6494044cf57bc597cb4238e357d0 Thu Oct 29 15:57:36 2020 -0700
    recover purple color and z-index to get it to the top refs #21980
  • lines changed 11, context: html, text, full: html, text
    479e3ae7b94f06ee5374eb22a867a621a044a963 Fri Oct 30 16:33:25 2020 -0700
    add a verticle line to indicate where on the graph the pointer is refs #21980
  • lines changed 1, context: html, text, full: html, text
    6d50d3a3b9e467e61853333fb6239eace1eaf70a Fri Oct 30 16:45:14 2020 -0700
    should be fixed position refs #21980
  • lines changed 4, context: html, text, full: html, text
    1bad77cde561abffb1db68d686ddd1de11ef8649 Fri Oct 30 21:27:35 2020 -0700
    correctly handle failedRequest and smaller vertical line however once a track is knocked out it does not come back with zoom in refs #21980
• src/hg/js/hgGateway.js
  • lines changed 1, context: html, text, full: html, text
    6c3a3d364f7467c9db4b7c0ea03a6ef05638d6db Mon Oct 26 10:45:19 2020 -0700
    Mention assembly accessions in watermark for speciesSearch as suggested by Hiram. refs #26081
  • lines changed 1, context: html, text, full: html, text
    f64d9c637f00882aa4db290ef7eb31999d3a1fe7 Mon Oct 26 13:31:36 2020 -0700
    Remove 'accession' and capitalize ID as suggested by Daniel. refs #26081
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    77022fe69d73bf7488dedd6a7a0c5a9dea3e854a Tue Oct 27 14:16:26 2020 -0700
    appears to be working OK even in dynamic update move refs #21980
  • lines changed 225, context: html, text, full: html, text
    03c9bfc4c9a1746228e2eb542ffd1f30851e83a4 Thu Oct 29 12:59:48 2020 -0700
    add mouseOver data display, commented out for this check in, uncomment to turn on refs #21980
  • lines changed 9, context: html, text, full: html, text
    860701f5cd184dc8809597a60156cc90be76fff8 Thu Oct 29 13:10:12 2020 -0700
    jshint clean refs #21980
  • lines changed 6, context: html, text, full: html, text
    41b1a2b603d2d1103b1cce9989a7f92aa76df840 Thu Oct 29 13:54:31 2020 -0700
    mouseOver function now enabled by hg.conf variable refs #21980
  • lines changed 55, context: html, text, full: html, text
    fa4c30bd748a9c94307d007cba26dd1505995e82 Fri Oct 30 16:38:22 2020 -0700
    add error handline on failed json read and vertical hightline line to indicate where on graph value is and turn off popUp when window scrolls refs #21980
  • lines changed 21, context: html, text, full: html, text
    1bad77cde561abffb1db68d686ddd1de11ef8649 Fri Oct 30 21:27:35 2020 -0700
    correctly handle failedRequest and smaller vertical line however once a track is knocked out it does not come back with zoom in refs #21980
• src/hg/js/mouseOver.js
  • lines changed 101, context: html, text, full: html, text
    0e367d14f1a802e6b644b86f1ea40d48d72c3426 Mon Oct 26 12:16:21 2020 -0700
    a very dirty version as this changes to more efficient mechanism refs #21980
  • lines changed 76, context: html, text, full: html, text
    e325b487322b1ae05b838b968ee933718890ebb4 Mon Oct 26 12:38:06 2020 -0700
    begin transition to track specific mouse movement events refs #21980
  • lines changed 35, context: html, text, full: html, text
    17e44fabd4e14d3bfe8aa6a6e06479b0031a2218 Mon Oct 26 15:21:47 2020 -0700
    cleaning up for better operation refs #21980
  • lines changed 32, context: html, text, full: html, text
    c3e7b398ffd33e71d9810e6f8906e3caf57290a3 Mon Oct 26 15:54:45 2020 -0700
    correctly following window scrolling refs #21980
  • lines changed 2, context: html, text, full: html, text
    465349055c8c59f2afc587972673c5761cff2f9b Mon Oct 26 16:04:09 2020 -0700
    correct X position for message when window is scrolled left-right in browser refs #21980
  • lines changed 28, context: html, text, full: html, text
    759bf533411ead63f7b23fccd569a37998c87d9c Mon Oct 26 16:30:43 2020 -0700
    isolate the popUp visible/disappear functions refs #21980
  • lines changed 83, context: html, text, full: html, text
    77022fe69d73bf7488dedd6a7a0c5a9dea3e854a Tue Oct 27 14:16:26 2020 -0700
    appears to be working OK even in dynamic update move refs #21980
  • lines changed 97, context: html, text, full: html, text
    45c2b537f043cbfd70658e8f391bf816492e19d1 Fri Oct 30 08:33:45 2020 -0700
    last dirty checkin before moving this code to hgTracks.js refs #21980
• src/hg/lib/hui.c
  • lines changed 19, context: html, text, full: html, text
    1203d7c21e26bd5d57154cc5c0c42780b8b5ca1a Tue Oct 27 10:11:47 2020 -0700
    Fixing bug in mouseOver trackDb setting, if a field to be substituted is a prefix to another field to be substituted, allow user to wrap one/both fields in curly braces like shell in order to protect the substitution
  • lines changed 7, context: html, text, full: html, text
    3001eec709205e44c2ed2f1c6f42df510b8a5c37 Thu Oct 29 14:47:14 2020 -0700
    Fix off by one in gnomAD VCF to bed conversion, which resulted in a url link out error, so adding new substitution to trackDb url, refs #25010
• src/hg/lib/mane.as
  • lines changed 1, context: html, text, full: html, text
    32a5e0d45acb28d9b29857148b479a696f0742b5 Tue Oct 27 14:55:33 2020 -0700
    MANE v0.92
• src/hg/makeDb/doc/calJac3.txt
  • lines changed 22, context: html, text, full: html, text
    75af194934ace57ff16cb6ecd8854c94da7bc567 Mon Oct 26 10:05:09 2020 -0700
    liftOver to calJac4 refs #24074
• src/hg/makeDb/doc/hg19.txt
  • lines changed 15, context: html, text, full: html, text
    33c5e452f2df131473468f0206a360a16ba9dcd3 Tue Oct 27 13:15:17 2020 -0700
    update per alert from Terence for new versions although hg19 needs to wait for the new files refs #26428
  • lines changed 8, context: html, text, full: html, text
    c248c85dafaa2167b3ad8e0ad76be7d4a9a05385 Fri Oct 30 09:02:47 2020 -0700
    lifting covid rare mutations to hg38 and polishing up the track a bit more, refs #26351
• src/hg/makeDb/doc/hg38/covidMuts.txt
  • lines changed 4, context: html, text, full: html, text
    c248c85dafaa2167b3ad8e0ad76be7d4a9a05385 Fri Oct 30 09:02:47 2020 -0700
    lifting covid rare mutations to hg38 and polishing up the track a bit more, refs #26351
• src/hg/makeDb/doc/hg38/mane.txt
  • lines changed 17, context: html, text, full: html, text
    32a5e0d45acb28d9b29857148b479a696f0742b5 Tue Oct 27 14:55:33 2020 -0700
    MANE v0.92
• src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
  • lines changed 17, context: html, text, full: html, text
    33c5e452f2df131473468f0206a360a16ba9dcd3 Tue Oct 27 13:15:17 2020 -0700
    update per alert from Terence for new versions although hg19 needs to wait for the new files refs #26428
• src/hg/makeDb/doc/mm39/initialBuild.txt
  • lines changed 16, context: html, text, full: html, text
    33c5e452f2df131473468f0206a360a16ba9dcd3 Tue Oct 27 13:15:17 2020 -0700
    update per alert from Terence for new versions although hg19 needs to wait for the new files refs #26428
• src/hg/makeDb/doc/mm39/lastzRuns.txt
  • lines changed 132, context: html, text, full: html, text
    a7784bd524306cf2cb63fc2ae2a4bb0ea4258c34 Mon Oct 26 10:02:43 2020 -0700
    lastz chainNet mm39 rn6 rheMac10 per MarkD request no redmine
• src/hg/makeDb/doc/rheMac10/lastzRuns.txt
  • lines changed 66, context: html, text, full: html, text
    a7784bd524306cf2cb63fc2ae2a4bb0ea4258c34 Mon Oct 26 10:02:43 2020 -0700
    lastz chainNet mm39 rn6 rheMac10 per MarkD request no redmine
• src/hg/makeDb/trackDb/human/covidHgeMuts.html
  • lines changed 16, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
  • lines changed 82, context: html, text, full: html, text
    c248c85dafaa2167b3ad8e0ad76be7d4a9a05385 Fri Oct 30 09:02:47 2020 -0700
    lifting covid rare mutations to hg38 and polishing up the track a bit more, refs #26351
• src/hg/makeDb/trackDb/human/covidHgiGwas.ra
  • lines changed 1, context: html, text, full: html, text
    e280a381ac34f5eaa7e24bebbca62766a712a22c Tue Oct 27 12:48:11 2020 -0700
    Rolling back move of Covid GWAS track to new COVID group -- this should happen when next COVID track goes out and group is created.
• src/hg/makeDb/trackDb/human/covidMuts.html
  • lines changed 82, context: html, text, full: html, text
    c248c85dafaa2167b3ad8e0ad76be7d4a9a05385 Fri Oct 30 09:02:47 2020 -0700
    lifting covid rare mutations to hg38 and polishing up the track a bit more, refs #26351
  • lines changed 73, context: html, text, full: html, text
    94e0992fb58a17ede81160b323acc58e17b1f92e Fri Oct 30 12:33:00 2020 -0700
    Restore Ana's tables. refs #26351
  • lines changed 6, context: html, text, full: html, text
    379c7a6bf84d248dbb6ab6aff34b0797b641a862 Fri Oct 30 12:35:49 2020 -0700
    Remove incorrect info about multi-region view for this track. We will add multi-region view later... refs #26351
• src/hg/makeDb/trackDb/human/hg19/gnomad.html
  • lines changed 2, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/gnomadCoverage.html
  • lines changed 2, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/gnomadPLI.html
  • lines changed 2, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/gnomadPext.html
  • lines changed 3, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/gnomadSv.html
  • lines changed 2, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/gnomadVariants.html
  • lines changed 2, context: html, text, full: html, text
    d159aab3866efb3877d62c84598e43ca0960b717 Tue Oct 27 00:45:29 2020 -0700
    corrected typos suggested in code review refs #26412
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 5, context: html, text, full: html, text
    bc6a803ab72e4c35c16af563b3e88c03ee1adb5c Mon Oct 26 12:10:29 2020 -0700
    Support bigBed extra fields substitutions in hgc URL link outs
  • lines changed 1, context: html, text, full: html, text
    1203d7c21e26bd5d57154cc5c0c42780b8b5ca1a Tue Oct 27 10:11:47 2020 -0700
    Fixing bug in mouseOver trackDb setting, if a field to be substituted is a prefix to another field to be substituted, allow user to wrap one/both fields in curly braces like shell in order to protect the substitution
  • lines changed 5, context: html, text, full: html, text
    3001eec709205e44c2ed2f1c6f42df510b8a5c37 Thu Oct 29 14:47:14 2020 -0700
    Fix off by one in gnomAD VCF to bed conversion, which resulted in a url link out error, so adding new substitution to trackDb url, refs #25010
  • lines changed 55, context: html, text, full: html, text
    1659bb5fb3af320bf948b13ab6996dafdaa2ff2f Fri Oct 30 14:55:35 2020 -0700
    Removing release tags for gnomad Pext track refs #25869
• src/hg/makeDb/trackDb/human/hg38/mane.alpha.ra
  • lines changed 17, context: html, text, full: html, text
    32a5e0d45acb28d9b29857148b479a696f0742b5 Tue Oct 27 14:55:33 2020 -0700
    MANE v0.92
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    32a5e0d45acb28d9b29857148b479a696f0742b5 Tue Oct 27 14:55:33 2020 -0700
    MANE v0.92
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 23, context: html, text, full: html, text
    e9f7d678ae071d34a34572af75ad908da13c1d7c Mon Oct 26 10:12:15 2020 -0700
    get rid of OMIM bigBed experiment
  • lines changed 3, context: html, text, full: html, text
    c248c85dafaa2167b3ad8e0ad76be7d4a9a05385 Fri Oct 30 09:02:47 2020 -0700
    lifting covid rare mutations to hg38 and polishing up the track a bit more, refs #26351
  • lines changed 2, context: html, text, full: html, text
    ac3405db09cef21fa842fdb2d1617afc565832c8 Fri Oct 30 12:22:59 2020 -0700
    Tweaking mouseover as Ana suggests. Trimming short label to 20 chars. refs #26351
• src/hg/makeDb/trackDb/virus/wuhCor1/conticello.html
  • lines changed 1, context: html, text, full: html, text
    b23b73b2b95f95cff1887b23e9ddaf1621029a29 Mon Oct 26 11:57:48 2020 -0700
    Adding blank HTML pages so trackDb strict build doesn't complain, no RM
  • lines changed 1, context: html, text, full: html, text
    020b0ae66f8b2a827324273cb6877d1f356d282d Mon Nov 2 08:19:04 2020 -0800
    fixing missing html page problem by removing the conticello track on wuhCor1, email from Lou
• src/hg/makeDb/trackDb/virus/wuhCor1/lollySarsCov2.html
  • lines changed 1, context: html, text, full: html, text
    b23b73b2b95f95cff1887b23e9ddaf1621029a29 Mon Oct 26 11:57:48 2020 -0700
    Adding blank HTML pages so trackDb strict build doesn't complain, no RM
• src/hg/makeDb/trackDb/virus/wuhCor1/nanoCov.html
  • lines changed 1, context: html, text, full: html, text
    b23b73b2b95f95cff1887b23e9ddaf1621029a29 Mon Oct 26 11:57:48 2020 -0700
    Adding blank HTML pages so trackDb strict build doesn't complain, no RM
• src/hg/makeDb/trackDb/virus/wuhCor1/ncbiOther.html
  • lines changed 1, context: html, text, full: html, text
    b23b73b2b95f95cff1887b23e9ddaf1621029a29 Mon Oct 26 11:57:48 2020 -0700
    Adding blank HTML pages so trackDb strict build doesn't complain, no RM
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    020b0ae66f8b2a827324273cb6877d1f356d282d Mon Nov 2 08:19:04 2020 -0800
    fixing missing html page problem by removing the conticello track on wuhCor1, email from Lou
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.uniprot.ra
  • lines changed 19, context: html, text, full: html, text
    d9d2c3a792d1ac1918260d454ed88728623234b9 Mon Nov 2 03:31:02 2020 -0800
    adding outlinks to wuhCor1 uniprot track, they used to be there, but were temporary deactivated, as UniProt wasn't online yet when we released this browser. No redmine ticket, as this is only re-activating previously existing functionality.
• src/hg/near/hgNear/getSeq.c
  • lines changed 2, context: html, text, full: html, text
    f43bcb8fb4ae5a1c6ba6efec394fcdc1050e1ad8 Fri Oct 30 06:47:08 2020 -0700
    fix some bugs with getting sequence in hgNear and hgGene
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 16, context: html, text, full: html, text
    b7bdc7ab888afd8258d4b4219c324ee96a28dd70 Mon Oct 26 10:13:13 2020 -0700
    fix build of GenomicDiff track refs #24074
  • lines changed 1, context: html, text, full: html, text
    303adeb8a48cd1cc7a87876ab80b0620d269b227 Tue Oct 27 12:32:10 2020 -0700
    odd behavior did not recognize ~ meaning HOME refs #26428
• src/hg/utils/phyloRenameAndPrune/phyloRenameAndPrune.c
  • lines changed 3, context: html, text, full: html, text
    db42a8012f0dad34f7dbe68a948970d3a17e1524 Mon Oct 26 09:38:10 2020 -0700
    hashTwoColumnFile expects whitespace-sep not tab-sep -- update usage message for {phylo,vcf}RenameAndPrune.
• src/hg/utils/tdbQuery/tdbQuery.c
  • lines changed 3, context: html, text, full: html, text
    151ad186929ae59ee3f5986826715ad684c23460 Thu Oct 29 17:41:44 2020 -0700
    Fix up after code review, refs #26421
• src/hg/utils/vcfRenameAndPrune/vcfRenameAndPrune.c
  • lines changed 3, context: html, text, full: html, text
    db42a8012f0dad34f7dbe68a948970d3a17e1524 Mon Oct 26 09:38:10 2020 -0700
    hashTwoColumnFile expects whitespace-sep not tab-sep -- update usage message for {phylo,vcf}RenameAndPrune.
• src/hg/utils/vcfToBed/vcfToBed.c
  • lines changed 2, context: html, text, full: html, text
    3001eec709205e44c2ed2f1c6f42df510b8a5c37 Thu Oct 29 14:47:14 2020 -0700
    Fix off by one in gnomAD VCF to bed conversion, which resulted in a url link out error, so adding new substitution to trackDb url, refs #25010
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    c044598f66b51eb17f0c800bc82061283bacfd66 Mon Nov 2 10:06:35 2020 -0800
    v407 preview1

• lines changed: 1867
• files changed: 91