File Changes for max

v408_base to v409_preview (2020-12-07 to 2021-01-04) v409

• src/hg/hgTracks/simpleTracks.c
  • lines changed 9, context: html, text, full: html, text
    02836b99a074f08b3be77de8933bf7fb5f0fe00c Wed Dec 16 06:26:34 2020 -0800
    show exon numbers configuration option was ignored for genePred and bigGenePred tracks, the exonNumbers cart variable now is taken into account refs #25325
• src/hg/htdocs/goldenPath/help/bigBed.html
  • lines changed 19, context: html, text, full: html, text
    4fcea62ede5b34df814333e242a865fb20dfb821 Thu Dec 10 02:57:37 2020 -0800
    adding linux commands to bigBed example 2, no redmine yet, but probably coming.
  • lines changed 72, context: html, text, full: html, text
    16a0bb49dfcbf27c039d99e4ab40a41c59814400 Fri Dec 11 05:56:03 2020 -0800
    a quickstart section for the bigBed.html page, may be not optimal yet, but to illustrate the idea more
  • lines changed 19, context: html, text, full: html, text
    679e26dcf187dd96851052d91081abf9c6864d4b Mon Dec 14 05:44:14 2020 -0800
    small fixed to bigBed docs page, refs #26677
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    eb6a35ecac2424ecf5b2b874dff935353e4f0a53 Wed Dec 9 01:29:24 2020 -0800
    another super old trackDb docs mistake, no redmine
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    a115ebc88f157c14032c4bb63ca8f7b453998ce5 Tue Dec 15 03:40:00 2020 -0800
    UniProt track should not show title but label on mouseover rightclick, refs #26687
• src/hg/lib/customFactory.c
  • lines changed 2, context: html, text, full: html, text
    54edad8bebf1ef9763b9f16ec2c34143c447aafa Thu Dec 10 06:17:14 2020 -0800
    auto-detecting track type bigInteract if custom track file ends with .inter.bb or .inter.bigBed, no redmine
• src/hg/lib/customTrack.c
  • lines changed 2, context: html, text, full: html, text
    54edad8bebf1ef9763b9f16ec2c34143c447aafa Thu Dec 10 06:17:14 2020 -0800
    auto-detecting track type bigInteract if custom track file ends with .inter.bb or .inter.bigBed, no redmine
• src/hg/makeDb/doc/hg19.txt
  • lines changed 31, context: html, text, full: html, text
    54197358a1407de6898c360a38df822257338112 Tue Dec 15 05:33:49 2020 -0800
    updating hgmd and ncbiRefseqHgmd to HGMD 2020, refs #24625
• src/hg/makeDb/doc/hg38/hgmd.txt
  • lines changed 2, context: html, text, full: html, text
    54197358a1407de6898c360a38df822257338112 Tue Dec 15 05:33:49 2020 -0800
    updating hgmd and ncbiRefseqHgmd to HGMD 2020, refs #24625
• src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
  • lines changed 2, context: html, text, full: html, text
    54197358a1407de6898c360a38df822257338112 Tue Dec 15 05:33:49 2020 -0800
    updating hgmd and ncbiRefseqHgmd to HGMD 2020, refs #24625
• src/product/installer/browserSetup.sh
  • lines changed 2, context: html, text, full: html, text
    c8bef32e9a011410ae03ed0b44316085c8df86ff Thu Dec 10 01:58:41 2020 -0800
    add the fonts packages to gbic installer script, refs #25525
• src/utils/chromToUcsc/chromToUcsc
  • lines changed 2, context: html, text, full: html, text
    cf1446a79ba6729f0d88f1ccca523d9604d758ca Tue Dec 15 02:09:54 2020 -0800
    fixing up the chromToUcsc test case to use a more realistic vcf.gz file, refs #26672
  • lines changed 3, context: html, text, full: html, text
    572f8e2a5e67250ee2802f039a8b97d2322cc99a Tue Dec 15 02:16:25 2020 -0800
    documenting supported file formats, refs #26689
• src/utils/chromToUcsc/tests/expected/hg19.vcf
  • lines changed 500, context: html, text, full: html, text
    231229599259249d0b0a00be9dd95b64d9d9a48c Tue Dec 15 01:58:10 2020 -0800
    adding VCF test case to chromToUcsc, no new feature or code change, so no redmine
• src/utils/chromToUcsc/tests/in/hg19.vcf
  • lines changed 500, context: html, text, full: html, text
    231229599259249d0b0a00be9dd95b64d9d9a48c Tue Dec 15 01:58:10 2020 -0800
    adding VCF test case to chromToUcsc, no new feature or code change, so no redmine
  • lines changed 500, context: html, text, full: html, text
    cf1446a79ba6729f0d88f1ccca523d9604d758ca Tue Dec 15 02:09:54 2020 -0800
    fixing up the chromToUcsc test case to use a more realistic vcf.gz file, refs #26672
• src/utils/chromToUcsc/tests/in/hg19.vcf.gz
  • lines changed 0, context: html, text, full: html, text
    cf1446a79ba6729f0d88f1ccca523d9604d758ca Tue Dec 15 02:09:54 2020 -0800
    fixing up the chromToUcsc test case to use a more realistic vcf.gz file, refs #26672
• src/utils/chromToUcsc/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    231229599259249d0b0a00be9dd95b64d9d9a48c Tue Dec 15 01:58:10 2020 -0800
    adding VCF test case to chromToUcsc, no new feature or code change, so no redmine
• src/utils/clusterMatrixToBarChartBed/tests/hub.conf
  • lines changed 23, context: html, text, full: html, text
    866a89e5704f4bde33de441b72016347a0cdd180 Tue Dec 22 06:01:02 2020 -0800
    adding hub.conf to Jim's new tool test directory