Commits for max

v411_preview to v411_preview2 (2021-02-15 to 2021-02-22) v411

f372380b2189cb11d92e59d1526d1e7d519a8c01 Mon Feb 15 04:59:37 2021 -0800

• updating docs page for cadd tracks, refs #18492
  • src/hg/makeDb/trackDb/human/cadd.html - lines changed 45, context: html, text, full: html, text

3a884d87e2f5198d79e8c628fad94112ed4d1a01 Mon Feb 15 05:48:31 2021 -0800

• updating CADD track docs, refs #18492
  • src/hg/makeDb/trackDb/human/cadd.html - lines changed 110, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cadd.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/caddSuper.html - lines changed 110, context: html, text, full: html, text

b475ddc8795329be93a783760d7aed704131d479 Wed Feb 17 01:48:32 2021 -0800

• adding JSON output to hgBlat, refs #27010
  • src/hg/hgBlat/hgBlat.c - lines changed 16, context: html, text, full: html, text
  • src/inc/psl.h - lines changed 3, context: html, text, full: html, text
  • src/lib/psl.c - lines changed 110, context: html, text, full: html, text

e705ce240cb855d55092b6b80c8f2dec1822aa74 Wed Feb 17 02:08:30 2021 -0800

• fixing various bugs in hgBlat json output, refs #27010
  • src/lib/psl.c - lines changed 14, context: html, text, full: html, text

38791fcc8e27d95bf1ecde01035aae26027f956b Thu Feb 18 05:05:17 2021 -0800

• making hgBlat json format look more like our API, refs #27010
  • src/hg/hgBlat/hgBlat.c - lines changed 1, context: html, text, full: html, text
  • src/inc/psl.h - lines changed 1, context: html, text, full: html, text
  • src/lib/psl.c - lines changed 17, context: html, text, full: html, text

623747f9b8345a8cd6470fa2adf14050a2bd7bd0 Thu Feb 18 06:22:07 2021 -0800

• adding knownCds to allways-add table list in hgMirror on gbib, refs #26781
  • src/hg/hgMirror/hgMirror - lines changed 3, context: html, text, full: html, text

d8f77b46c9ef3bbb0c62927eb86fe8aa3b1d494b Thu Feb 18 06:31:01 2021 -0800

• making some changes to the wiggle docs page, OKed by Hiram, no redmine yet
  • src/hg/htdocs/goldenPath/help/wiggle.html - lines changed 35, context: html, text, full: html, text

382d7a0dacd948be55a2aa8548db7542a5e3335a Thu Feb 18 06:31:43 2021 -0800

• fixing cadd deletions and inserts, refs #18492
  • src/hg/makeDb/cadd/caddToBed.py - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text

bb3efd1b30b2fe47ce45c3c336f8982b5c7a7463 Thu Feb 18 06:32:41 2021 -0800

• tiny change to uniprot pipeline, no redmine
  • src/hg/utils/otto/uniprot/doUniprot - lines changed 4, context: html, text, full: html, text

b30a401cf1561a0450fafd9017704241eaa026c2 Thu Feb 18 06:33:45 2021 -0800

• forgot to add makefile in an older commit, refs #26959
  • src/utils/chromToUcsc/tests/makefile - lines changed 2, context: html, text, full: html, text