Commits for markd

v412_preview to v412_preview2 (2021-03-08 to 2021-03-15) v412

4f3a8204a9540e2e249b7a1c734b630a2b68e6f9 Mon Mar 8 15:22:48 2021 -0800

• one more sentence to blat release history
  • src/blat/version.doc - lines changed 1, context: html, text, full: html, text

1e54c858757a7173968fb3083de89e534716dde0 Mon Mar 8 15:32:16 2021 -0800

• don't create confusing cascade of error when GFF3 header is missing or not a GFF3 file
  • src/lib/gff3.c - lines changed 4, context: html, text, full: html, text

2471a2671ee4993f4a5cbbd40410398f37fe79cc Mon Mar 8 18:04:32 2021 -0800

• set blat version to 37x1 per Galt
  • src/inc/genoFind.h - lines changed 1, context: html, text, full: html, text

b4cb35b2a3919b84f30a88b41e4a78277528c710 Thu Mar 11 15:24:33 2021 -0800

• import of GENCODE V37
  • src/hg/makeDb/doc/hg38/gencode.txt - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 96, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV37.html - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV37.ra - lines changed 286, context: html, text, full: html, text

e0c79a537765c08c38bf30eae916053f22e0fe20 Fri Mar 12 14:36:34 2021 -0800

• tracked version change in expected results
  • src/gfServer/tests/expected/testDynServer.out - lines changed 1, context: html, text, full: html, text
  • src/gfServer/tests/expected/testDynServerPcr.out - lines changed 1, context: html, text, full: html, text
  • src/gfServer/tests/expected/testDynServerPerSeqMax.out - lines changed 1, context: html, text, full: html, text
  • src/gfServer/tests/expected/testDynServerTrans.out - lines changed 1, context: html, text, full: html, text
  • src/gfServer/tests/expected/testDynServerWithDir.out - lines changed 1, context: html, text, full: html, text

dc6ddf665daba39f0d4aac9c83e2d0764da8cf3b Fri Mar 12 20:48:48 2021 -0800

• import of gencodeV37lift37
  • src/hg/makeDb/doc/hg19.gencode.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm39/gencode.txt - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 91, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV37lift37.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV37lift37.ra - lines changed 224, context: html, text, full: html, text

3c5d95387a55dd5571b5e0000a3d497c05db623f Sat Mar 13 19:38:39 2021 -0800

• import of GENCOCE VM24
  • src/hg/makeDb/doc/mm39/gencode.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbs - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbsOldSchema - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/gencodeLoad.mk - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 96, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeSuper.html - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM26.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM26.ra - lines changed 286, context: html, text, full: html, text