Commits for hiram

v430_preview2 to v430_base (2022-04-18 to 2022-04-25) v430

29497c1dca3c7480705e178357dac9a7fa49cfb5 Mon Apr 18 20:16:35 2022 -0700

• add make doc for ncbiRefSeq build refs #29128
  • src/hg/makeDb/doc/canFam4/initialBuild.txt - lines changed 52, context: html, text, full: html, text

634ca65b0681b7d39e93c452e9c1d28aa8b3ac3e Tue Apr 19 12:37:53 2022 -0700

• add clay email to recipient list refs #28930
  • src/hg/gar/gar.cgi.pl - lines changed 1, context: html, text, full: html, text

6cfdc4a871b565db2b9152612d147877b4a9783b Tue Apr 19 12:52:47 2022 -0700

• add link to blog post refs #29237
  • src/hg/gar/garTable.sh - lines changed 3, context: html, text, full: html, text

15b08d18cac716bb9f09d873f1df06787fab3dfc Tue Apr 19 13:11:01 2022 -0700

• bare minimum to satisify build system refs #29237
  • src/hg/gar/makefile - lines changed 24, context: html, text, full: html, text

311012f072535713c144bfe39436acd835eca9ef Tue Apr 19 13:32:41 2022 -0700

• adding gar to the build system refs #29237
  • src/hg/gar/makefile - lines changed 6, context: html, text, full: html, text
  • src/hg/makefile - lines changed 1, context: html, text, full: html, text

d5cafae5e0dce22ad6ca2639a8bb3896f1059412 Wed Apr 20 12:30:45 2022 -0700

• get the assemblyRequest.html to htdocs-beta during a make beta refs #29237
  • src/hg/htdocs/makefile - lines changed 1, context: html, text, full: html, text

e92e04e2d6dcf943fb7977d8591817233803fe54 Wed Apr 20 12:49:11 2022 -0700

• do the copy of assemblyRequest.html to htdocs-beta before the rsync to hgwbeta statements refs #29237
  • src/hg/htdocs/makefile - lines changed 2, context: html, text, full: html, text

5dc00f0f294eac72fdf688556698487c1547ceec Thu Apr 21 09:02:46 2022 -0700

• add the rsync command that will get the assemblyRequest.html file to hgwbeta refs #29237
  • src/hg/htdocs/makefile - lines changed 1, context: html, text, full: html, text

a023c503eab0b9d165895f236f2614fac4f15723 Thu Apr 21 11:55:14 2022 -0700

• adding NCBI RefSeq genes refs #29278
  • src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.refSeqComposite.html - lines changed 186, context: html, text, full: html, text

8cbdb800a1d6e5a699372b44567f77ef6ff4cc37 Thu Apr 21 12:21:36 2022 -0700

• adding NCBI RefSeq genes refs #29278
  • src/hg/makeDb/doc/chm13v2.0/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/chm13v2.0/trackDb/GCA_009914755.4_T2T-CHM13v2.0.trackDb.txt - lines changed 93, context: html, text, full: html, text

82f90a52db4e8366bc85d4f42370da8a9827ef1b Thu Apr 21 12:35:01 2022 -0700

• include download link for NCBI RefSeq gene gtf file refs #29278
  • src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.description.html - lines changed 1, context: html, text, full: html, text

fc070c60b3b5baf1aba50372f28ea8788829605a Thu Apr 21 12:50:41 2022 -0700

• adding the RefSeq sequence names refs #29278
  • src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.chromAlias.txt - lines changed 25, context: html, text, full: html, text