Commits for jcasper

v430_preview to v430_preview2 (2022-04-11 to 2022-04-18) v430

c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700

• Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
  • src/hg/makeDb/doc/hg38/singleCell.txt - lines changed 83, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/colonWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/ileumWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/rectumWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra - lines changed 6, context: html, text, full: html, text

ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700

• Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 66, context: html, text, full: html, text
  • src/hg/htdocs/images/singleCell/singleCellMerged.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/bloodHao.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/colonWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/cortexVelmeshev.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/fetalGeneAtlas.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/heartCellAtlas.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/ileumWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/liverMacParland.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/lungTravaglini2020.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/muscleDeMicheli.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/pancreasBaron.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/placentaVentoTormo.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/rectumWang.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/skinSoleBoldo.ra - lines changed 1, context: html, text, full: html, text

8102c8c2b15180f3e48534af65f117ac467c4505 Thu Apr 14 16:00:15 2022 -0700

• Makedoc for initial DECIPHER build on hg38, refs #29130
  • src/hg/makeDb/doc/hg38/hg38.txt - lines changed 24, context: html, text, full: html, text

75947df74b1d3b4e6e0973704cce6482d1ee814f Fri Apr 15 11:34:48 2022 -0700

• Fixing broken link; hic docs are now on a separate page - no ticket
  • src/hg/hgCustom/hgCustom.c - lines changed 1, context: html, text, full: html, text

e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700

• Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/hicTrack.c - lines changed 59, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hicUi.h - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/hicUi.c - lines changed 42, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 1, context: html, text, full: html, text

efb0ef00c7d06d1eb805f4fc6619342344c7c715 Fri Apr 15 14:11:11 2022 -0700

• Adding tdb variables for default hic interaction distance filters, refs #29280
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text

1d677ef02ee511f17c526869d9d058158771f6dc Fri Apr 15 17:15:05 2022 -0700

• Enforcing non-negative values for hicDistanceMin and hicDistanceMax, refs #29280
  • src/hg/lib/hicUi.c - lines changed 10, context: html, text, full: html, text