Commits for max

v431_preview to v431_preview2 (2022-05-02 to 2022-05-09) v431

61b3317ed3251ea30b5222f9e47aad8cc59745db Tue May 3 02:09:37 2022 -0700

• finally, add RNAplot and dot_static to GBIC, not redmine, email between Jorge and QA. I planned to do this in 2017, but then forgot
  • src/product/installer/browserSetup.sh - lines changed 3, context: html, text, full: html, text

cadea00489bd3ae3b295f3237ef9eab3dbf65f10 Wed May 4 07:23:58 2022 -0700

• adding ba.4 and ba.5 tracks to wuhcor1, refs #29375
  • src/hg/makeDb/doc/wuhCor1/variantMuts.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra - lines changed 60, context: html, text, full: html, text

2671a45e23726cd9b102520f02df27e24c2661d0 Wed May 4 17:54:04 2022 -0700

• fix wrong filename for aa strains wuhcor1 track, refs #29375
  • src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra - lines changed 2, context: html, text, full: html, text

f72a53450af8d83fabb7ec7273d641453e168876 Wed May 4 18:03:28 2022 -0700

• fixed filenames on gtex coverage track, refs #29381
  • src/hg/makeDb/trackDb/human/gtexCov.ra - lines changed 54, context: html, text, full: html, text

0412170f60a10832c07489dd5fadf5656ae8e148 Thu May 5 07:55:04 2022 -0700

• forgot once more than probesets are usually on hg19, not hg38, adding a note for myself to the docs page. Also adding a note that avada has been lifted to hg38. no redmines.
  • src/hg/makeDb/trackDb/human/avada.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/exomeProbesets.html - lines changed 8, context: html, text, full: html, text

c09a7a320420ebbd4262d6611b244a07b009336b Thu May 5 08:54:17 2022 -0700

• starting docs for HMC and Jarvis, refs #29153 and refs #29154
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 57, context: html, text, full: html, text

bd24865e9b1f065a61e8069a5eb056cf91dd7fc8 Thu May 5 09:34:46 2022 -0700

• adding hmc make script, refs #29153
  • src/hg/makeDb/scripts/hmc/hmcToWig.py - lines changed 87, context: html, text, full: html, text

d498335adfefc70cbf9673f489688bd34503d521 Thu May 5 09:50:40 2022 -0700

• more polishing up of the constraint scores super track, refs #29153 and refs #29154
  • src/hg/makeDb/trackDb/human/constraint.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hmc.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/jarvis.ra - lines changed 1, context: html, text, full: html, text

fb75f30bb5d7fc58874d8765f209d13934c96276 Fri May 6 02:59:50 2022 -0700

• fixing up HMC track, refs #29153, spent waaaay to much time with this track
  • src/hg/makeDb/doc/hg19.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hmc.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/scripts/hmc/hmcToWig.py - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraint.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/constraintSuper.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hmc.ra - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/jarvis.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

dfc9b0299bec4bfa134663c775ef1d9d70e32bdd Fri May 6 03:06:41 2022 -0700

• small tweaks to constraint tracks, refs #29153
  • src/hg/makeDb/trackDb/human/hmc.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/jarvis.ra - lines changed 1, context: html, text, full: html, text

b1961e97b318909051fc9070837ab17494d5da67 Fri May 6 05:45:59 2022 -0700

• documenting bug in cons241 cactus track on the docs page, emails with Hiram, Markd, Braney, no redmine
  • src/hg/makeDb/trackDb/human/hg38/cons241way.html - lines changed 10, context: html, text, full: html, text

26d42ebd36016677dac1a3b49695e2b6768d6ba1 Fri May 6 05:48:11 2022 -0700

• small addition to hmc docs page, refs #
  • src/hg/makeDb/trackDb/human/constraintSuper.html - lines changed 22, context: html, text, full: html, text

6f3383011d3d8aa64883b9437baec9440052046f Fri May 6 08:05:10 2022 -0700

• adding chrX scores to gnomad constraints on hg38, refs #29026
  • src/hg/makeDb/doc/hg38/gnomad.txt - lines changed 3, context: html, text, full: html, text

36e6f34cedb100600d85f1ceaeb830666d5eda81 Fri May 6 08:08:42 2022 -0700

• doc'ing gnomad chrX scores.
  • src/hg/makeDb/trackDb/human/hg38/gnomad.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text

27fd1e0b2d3b1df5be807a9405db92fe1479192b Mon May 9 05:43:38 2022 -0700

• fixing up makedoc for jarvis, refs #29154
  • src/hg/makeDb/doc/hg38/jarvis.txt - lines changed 8, context: html, text, full: html, text