All File Changes

v434_preview2 to v434_base (2022-07-11 to 2022-07-18) v434

• src/hg/cgilib/cartTrackDb.c
  • lines changed 7, context: html, text, full: html, text
    ec1d9ccbe450f877f80572cdf537f9b7404640a0 Fri Jul 15 08:02:21 2022 -0700
    add tbNoGenome setting for hgTables, refs #29729
• src/hg/hgTracks/bigRmskTrack.c
  • lines changed 275, context: html, text, full: html, text
    18b8815d717cb178232321e32c31dba40fd5e72d Wed Jul 13 17:12:25 2022 -0700
    integrate bigRmsk track updates from Robert Hubley
• src/hg/hgc/bigRmskClick.c
  • lines changed 127, context: html, text, full: html, text
    18b8815d717cb178232321e32c31dba40fd5e72d Wed Jul 13 17:12:25 2022 -0700
    integrate bigRmsk track updates from Robert Hubley
• src/hg/hgc/hgc.c
  • lines changed 5, context: html, text, full: html, text
    a928b604b76de30a3fc21db10d72ba48a219bc12 Tue Jul 12 06:01:19 2022 -0700
    fixing embedded JSON bigbed tables, refs #29742
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 3, context: html, text, full: html, text
    5df723f25a3b78158dac9e4c33d965e7b5878054 Wed Jul 13 07:46:36 2022 -0700
    Highlighting step-by-step blog instructions inspired by MLQ refs #29747
• src/hg/htdocs/goldenPath/help/publicHubGuidelines.html
  • lines changed 15, context: html, text, full: html, text
    1bb79744d3ab663ad4b6fdfe67f55bca080caa0b Fri Jul 15 19:45:38 2022 -0700
    Creating a page for public hub guidelines, refs #28424
• src/hg/htdocs/images/rmskExample1.svg
  • lines changed 51, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/htdocs/images/rmskExample2.svg
  • lines changed 67, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/htdocs/images/rmskExample3.svg
  • lines changed 77, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/htdocs/images/rmskExample4.svg
  • lines changed 69, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/hubApi/tests/expected/list02.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/list03.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/list08.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/list09.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/schema03.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/schema06.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/schema10.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/test0.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/test41.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/test48.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/test49.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/hubApi/tests/expected/test50.gz
  • lines changed 0, context: html, text, full: html, text
    439608041164dc94ae3b8e9228e3a4d22723d867 Fri Jul 15 15:17:24 2022 -0700
    updated to match current conditions in these tests refs #29729
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    f4ff2d1f35b3b450642695a48e57d20acb4b5614 Mon Jul 18 10:13:19 2022 -0700
    New version number v434
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    32aa4e255c05eeaa4fdce8382311e47db4006f29 Wed Jul 13 13:40:57 2022 -0700
    save out cart when giving user chance to redirect to a different machine. This preserves the default cart contents.
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
  • lines changed 13, context: html, text, full: html, text
    95a16d875326cc83a774eb9f52a11c003cba36d6 Fri Jul 15 11:00:46 2022 -0700
    eliminate obsolete trimmedOrgName variable and correct date discovery refs #29734
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 56, context: html, text, full: html, text
    1539b78400cd49aec953ea11c9db24e75a4e1f7a Mon Jul 11 12:41:59 2022 -0700
    catch up GenArk lists with VGP lists refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 56, context: html, text, full: html, text
    c519723f63e27a28fbc3191e3c9971630a16d883 Mon Jul 11 16:18:52 2022 -0700
    catch up GenArk with VGP listings refs #29545
• src/hg/makeDb/doc/hg19.gencode.txt
  • lines changed 27, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/doc/hg38/gencode.txt
  • lines changed 34, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/doc/hs1/hubTextFiles/hs1.description.html
  • lines changed 131, context: html, text, full: html, text
    c82feb4ba334e46ffe8f4f71f0470ef751cf981b Sat Jul 16 15:09:59 2022 -0700
    gateway description page from hgdownload hub needs to be edited refs #29762
  • lines changed 131, context: html, text, full: html, text
    2b22cb38cc9a41ec95eb8ceea4dbc6e1205aa707 Mon Jul 18 09:18:48 2022 -0700
    moved files to trackDb/human/hs1 refs #29762
• src/hg/makeDb/doc/hs1/hubTextFiles/hubAndGenome.txt
  • lines changed 27, context: html, text, full: html, text
    a3ca1677f19ad5f44f8c3cd694e226d035771ab7 Sat Jul 16 14:42:40 2022 -0700
    capture hub static text files refs #29762
  • lines changed 8, context: html, text, full: html, text
    12aaa9b4b1645f687d42e16c88e66e653e38ca9a Sat Jul 16 15:10:40 2022 -0700
    better names and correct dynablat definition refs #29762
  • lines changed 27, context: html, text, full: html, text
    2b22cb38cc9a41ec95eb8ceea4dbc6e1205aa707 Mon Jul 18 09:18:48 2022 -0700
    moved files to trackDb/human/hs1 refs #29762
• src/hg/makeDb/doc/hs1/initial.txt
  • lines changed 13, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/doc/hs1/t2t-supplied.txt
  • lines changed 381, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    2ad94b480e48650b02c48afbfa5b7d16e191b547 Mon Jul 11 21:33:11 2022 -0700
    catching up GenArk with VGP refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 39, context: html, text, full: html, text
    742d5c7fccb860640b4421f3e81459c71662276c Mon Jul 11 17:07:14 2022 -0700
    catching up GenArk listings with VGP listingf refs #29545
  • lines changed 5, context: html, text, full: html, text
    8ce4fceea6c2a4286bca7d1843c77ec9fe70238d Mon Jul 11 21:46:08 2022 -0700
    catching up GenArk with VGP refs #29545
  • lines changed 1, context: html, text, full: html, text
    6f9fe204e90acfa0ce38667facc41cf1685622e7 Thu Jul 14 15:53:42 2022 -0700
    adding an old platypus assembly to run up a liftOver to a newer assembly refs #29753
• src/hg/makeDb/doc/mm39/gencode.txt
  • lines changed 31, context: html, text, full: html, text
    b9b3c73197da510f27595dcf63646cabeb3ebe8c Tue Jul 12 11:53:41 2022 -0700
    add All GENCODE VM30
  • lines changed 1, context: html, text, full: html, text
    fd376287654bd9695e0f8c2da1cb611519ac29ba Tue Jul 12 11:54:23 2022 -0700
    add All GENCODE VM30
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 19, context: html, text, full: html, text
    f63a5430d53d9515f12484904994b7aadedcd6a0 Mon Jul 11 21:01:01 2022 -0700
    catching up GenArk with VGP refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    b9a7a8323ab45f2ba91c19546cfcbec5c9df0f28 Thu Jul 14 18:04:56 2022 -0700
    catch up VGP with new and updated assemblies already in GenArk refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    b9a7a8323ab45f2ba91c19546cfcbec5c9df0f28 Thu Jul 14 18:04:56 2022 -0700
    catch up VGP with new and updated assemblies already in GenArk refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 24, context: html, text, full: html, text
    b9a7a8323ab45f2ba91c19546cfcbec5c9df0f28 Thu Jul 14 18:04:56 2022 -0700
    catch up VGP with new and updated assemblies already in GenArk refs #29545
  • lines changed 1, context: html, text, full: html, text
    d061e1615139355c2ba32dedf5c99e0101ffb23d Thu Jul 14 18:23:48 2022 -0700
    correct a name spelling refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 24, context: html, text, full: html, text
    a48630858b24b1a4dacf2077c92a44202b31b0b1 Thu Jul 14 19:21:55 2022 -0700
    catch up VGP with new and updated assemblies already in GenArk refs #29545
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 4, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
  • lines changed 2, context: html, text, full: html, text
    b9b3c73197da510f27595dcf63646cabeb3ebe8c Tue Jul 12 11:53:41 2022 -0700
    add All GENCODE VM30
  • lines changed 2, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/outside/gencode/lib/gencode/biotypes.py
  • lines changed 3, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/outside/gencode/lib/gencode/gencodeTags.py
  • lines changed 1, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/schema/all.joiner
  • lines changed 90, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/trackDb/crisprAll.ra
  • lines changed 2, context: html, text, full: html, text
    ec1d9ccbe450f877f80572cdf537f9b7404640a0 Fri Jul 15 08:02:21 2022 -0700
    add tbNoGenome setting for hgTables, refs #29729
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV41lift37.html
  • lines changed 32, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV41lift37.ra
  • lines changed 224, context: html, text, full: html, text
    b610fbd43a68ff6fc49fcce3c638274831ca60ba Tue Jul 12 13:04:52 2022 -0700
    added All GENCODE V41lift37
• src/hg/makeDb/trackDb/human/hg38/knownGeneV41.html
  • lines changed 5, context: html, text, full: html, text
    ffed2a5b24632c3473db7bdec4f859a40f148ad1 Tue Jul 12 10:35:27 2022 -0700
    fix stats on knownGeneV41 html page
• src/hg/makeDb/trackDb/human/hg38/multiz30Logo.ra
  • lines changed 4, context: html, text, full: html, text
    dadc555b01ea4eb65c8e9117e8d493ca92b89016 Tue Jul 12 12:52:09 2022 -0700
    move 30way logo bigwigs down a level
• src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
  • lines changed 4, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV41.html
  • lines changed 1, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV41.ra
  • lines changed 2, context: html, text, full: html, text
    2ac71d8e46cf67f4532b49ca144a4aa913400b23 Tue Jul 12 11:01:16 2022 -0700
    import of final GENCODE V41 release
• src/hg/makeDb/trackDb/human/hs1/catLiftOffGenesV1.trackDb.ra
  • lines changed 16, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/censat.trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/clinVar20220313.trackDb.ra
  • lines changed 9, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/cytoBandMapped.trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/dbSNP155.trackDb.ra
  • lines changed 9, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/description.html
  • lines changed 131, context: html, text, full: html, text
    4f1ef650083f68151d83626aa7ca30dc87efc687 Mon Jul 18 09:18:00 2022 -0700
    html and text files here for the hs1 hub refs #29762
• src/hg/makeDb/trackDb/human/hs1/encode.trackDb.ra
  • lines changed 1599, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/gwasSNPs2022-03-08.trackDb.ra
  • lines changed 9, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/hgCactus.trackDb.ra
  • lines changed 46, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/hgLiftOver.trackDb.ra
  • lines changed 70, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/hgUnique.trackDb.ra
  • lines changed 32, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenesV1.html
  • lines changed 104, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.censat.html
  • lines changed 34, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.clinVar20220313.html
  • lines changed 14, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.dbSNP155.html
  • lines changed 14, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.encode.html
  • lines changed 41, context: html, text, full: html, text
    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
    re-did the quick and dirty import of the GenArk T2T-supplied tracks so it will be possible to add pending tracks
• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.gwasSNPs2022-03-08.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.hgCactus.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.microsatellites.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.proseq.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.rdnaModel.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.rnaseq.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.sgdpCopyNumber.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/GCA_009914755.4_T2T-CHM13v2.0.t2tRepeatMasker.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/catLiftOffGenesV1.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/hs1/html/gwasSNPs2022-03-08.html
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    4f1ef650083f68151d83626aa7ca30dc87efc687 Mon Jul 18 09:18:00 2022 -0700
    html and text files here for the hs1 hub refs #29762
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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    c200ff2fb784fbbb87ef547abde79d805217d3b5 Fri Jul 15 20:32:22 2022 -0700
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• src/hg/makeDb/trackDb/human/trackDb.ra
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    84f3241dc13c8d2a39246d60b18ad5027682890c Mon Jul 11 12:32:28 2022 -0700
    Removing release tag, refs #29720
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    5ca9c0bc1d841741e75f20955af5007adc318163 Thu Jul 14 15:19:56 2022 -0700
    Updated searchStanza from lrgBigPsl to lrgTranscriptAli, refs #29726
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneVM30.html
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    f7cada5679dfea5cb2130b870055fef00c384d2c Tue Jul 12 13:28:47 2022 -0700
    add stats for VM30
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra
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    b9b3c73197da510f27595dcf63646cabeb3ebe8c Tue Jul 12 11:53:41 2022 -0700
    add All GENCODE VM30
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeSuper.html
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    b9b3c73197da510f27595dcf63646cabeb3ebe8c Tue Jul 12 11:53:41 2022 -0700
    add All GENCODE VM30
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM30.html
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    b9b3c73197da510f27595dcf63646cabeb3ebe8c Tue Jul 12 11:53:41 2022 -0700
    add All GENCODE VM30
• src/inc/srcVersion.h
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    f4ff2d1f35b3b450642695a48e57d20acb4b5614 Mon Jul 18 10:13:19 2022 -0700
    New version number v434
• src/utils/qa/checkSyncAndMetaDataAll.py
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    25e67bf9ad9092811cb1879591f736b4373c5da9 Thu Jul 14 16:37:02 2022 -0700
    Updating script to accommodate hg38/mm39 pushedout tables for hgw1, no RM
• src/utils/qa/imageComp.py
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    af69ffbf81b490a42e1ac09e4c49e3043ef2c3c7 Wed Jul 13 19:44:06 2022 -0700
    Updating script to silence NameError, no RM
• src/utils/qa/weeklybld/buildEnv.csh
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    8233a2a6a37f580795ae04ad2c0e111025fecd1c Mon Jul 18 10:11:50 2022 -0700
    v434 final build, refs #29716

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