File Changes for hiram

v441_preview to v441_preview2 (2022-11-28 to 2022-12-05) v441

• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 34, context: html, text, full: html, text
    5ffc12008daeacde7cddf891ab0f608087950b79 Mon Nov 28 09:56:16 2022 -0800
    catching up 34 assemblies for VGP refs #29545
  • lines changed 1, context: html, text, full: html, text
    1edfbfe359de39c06db7b6146b12d50d7593ee3d Wed Nov 30 21:30:38 2022 -0800
    adding GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly per user request refs #30332
• src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh
  • lines changed 5, context: html, text, full: html, text
    8a48909099f3b349c33c99244d63530d2a9832e6 Mon Nov 28 14:45:30 2022 -0800
    relaxing the limits for fish legacy an VGP assemblies refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    5239d4ca823ce6c2fa94e00e99fc14236ef51e17 Mon Nov 28 10:21:36 2022 -0800
    catching up 4 VGP assemblies refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 17, context: html, text, full: html, text
    771f125492518517ad0f81a3c9629a9272b508dc Mon Nov 28 11:15:22 2022 -0800
    adding 16 for VGP catch up refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 13, context: html, text, full: html, text
    e2a2093ed6b550b4272c12ac462fb36989bd287a Mon Nov 28 11:57:08 2022 -0800
    adding 9 catch up for VGP refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    1edfbfe359de39c06db7b6146b12d50d7593ee3d Wed Nov 30 21:30:38 2022 -0800
    adding GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly per user request refs #30332
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    fddeb26a1ca96fb3d447d016a7cd1d4b8258d919 Mon Nov 28 11:34:24 2022 -0800
    catch up 2 assemblies for VGP project refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    a4384852d4d0aaa1a301a28e29f47a734479d14c Mon Nov 28 11:58:01 2022 -0800
    adding 3 catch up for VGP refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 23, context: html, text, full: html, text
    4312c884bef3a7db6c2fb009aa8f0fa6c657f911 Mon Nov 28 13:10:34 2022 -0800
    catch up about 34 assemblies for VGP refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    4312c884bef3a7db6c2fb009aa8f0fa6c657f911 Mon Nov 28 13:10:34 2022 -0800
    catch up about 34 assemblies for VGP refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 32, context: html, text, full: html, text
    4312c884bef3a7db6c2fb009aa8f0fa6c657f911 Mon Nov 28 13:10:34 2022 -0800
    catch up about 34 assemblies for VGP refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 35, context: html, text, full: html, text
    4312c884bef3a7db6c2fb009aa8f0fa6c657f911 Mon Nov 28 13:10:34 2022 -0800
    catch up about 34 assemblies for VGP refs #29545
• src/hg/utils/automation/chromAlias.pl
  • lines changed 1, context: html, text, full: html, text
    5ab456ddf76e0e021fe6a7f5fb821888edbf1c2f Mon Nov 28 13:27:24 2022 -0800
    more generic use of file names refs #30326
• src/inc/common.mk
  • lines changed 8, context: html, text, full: html, text
    860f671b8332c9be7d88450c7f5ad7ac5c25dd21 Wed Nov 30 16:10:14 2022 -0800
    and yet another brew upgrade addition for the Mac OSX no redmine