Commits for hiram

5ffc12008daeacde7cddf891ab0f608087950b79 Mon Nov 28 09:56:16 2022 -0800

catching up 34 assemblies for VGP refs #29545
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 34, context: html, text, full: html, text

5239d4ca823ce6c2fa94e00e99fc14236ef51e17 Mon Nov 28 10:21:36 2022 -0800

catching up 4 VGP assemblies refs #29545
- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 6, context: html, text, full: html, text

771f125492518517ad0f81a3c9629a9272b508dc Mon Nov 28 11:15:22 2022 -0800

adding 16 for VGP catch up refs #29545
- src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 17, context: html, text, full: html, text

fddeb26a1ca96fb3d447d016a7cd1d4b8258d919 Mon Nov 28 11:34:24 2022 -0800

catch up 2 assemblies for VGP project refs #29545
- src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 3, context: html, text, full: html, text

e2a2093ed6b550b4272c12ac462fb36989bd287a Mon Nov 28 11:57:08 2022 -0800

adding 9 catch up for VGP refs #29545
- src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 13, context: html, text, full: html, text

a4384852d4d0aaa1a301a28e29f47a734479d14c Mon Nov 28 11:58:01 2022 -0800

adding 3 catch up for VGP refs #29545
- src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 4, context: html, text, full: html, text

4312c884bef3a7db6c2fb009aa8f0fa6c657f911 Mon Nov 28 13:10:34 2022 -0800

catch up about 34 assemblies for VGP refs #29545
- src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv - lines changed 32, context: html, text, full: html, text
- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt - lines changed 35, context: html, text, full: html, text

5ab456ddf76e0e021fe6a7f5fb821888edbf1c2f Mon Nov 28 13:27:24 2022 -0800

more generic use of file names refs #30326
- src/hg/utils/automation/chromAlias.pl - lines changed 1, context: html, text, full: html, text

8a48909099f3b349c33c99244d63530d2a9832e6 Mon Nov 28 14:45:30 2022 -0800

relaxing the limits for fish legacy an VGP assemblies refs #29545
- src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh - lines changed 5, context: html, text, full: html, text

860f671b8332c9be7d88450c7f5ad7ac5c25dd21 Wed Nov 30 16:10:14 2022 -0800

and yet another brew upgrade addition for the Mac OSX no redmine
- src/inc/common.mk - lines changed 8, context: html, text, full: html, text

1edfbfe359de39c06db7b6146b12d50d7593ee3d Wed Nov 30 21:30:38 2022 -0800

adding GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly per user request refs #30332
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 2, context: html, text, full: html, text