All File Changes

v445_preview to v445_preview2 (2023-02-27 to 2023-03-06) v445

• confs/asia.hg.conf
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    cd01000f9a73c0dc6797f356cfd14432ed912af8 Sun Mar 5 01:11:28 2023 -0800
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 3, context: html, text, full: html, text
    cd01000f9a73c0dc6797f356cfd14432ed912af8 Sun Mar 5 01:11:28 2023 -0800
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
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    cd01000f9a73c0dc6797f356cfd14432ed912af8 Sun Mar 5 01:11:28 2023 -0800
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 3, context: html, text, full: html, text
    cd01000f9a73c0dc6797f356cfd14432ed912af8 Sun Mar 5 01:11:28 2023 -0800
    Installing updated hg.conf files from UCSC servers
• src/browserbox/root/updateBrowser.sh
  • lines changed 34, context: html, text, full: html, text
    3fd21205842b758af068e7b5e0614d2d55216759 Fri Mar 3 09:16:19 2023 -0800
    Add a 'vm' option to gbib's update script that can update the underlying operating system to the next version, refs #24254
• src/hg/cgilib/cartTrackDb.c
  • lines changed 5, context: html, text, full: html, text
    d9820e81306c41e9a2093bcd2166b5543bc16bd0 Thu Mar 2 17:21:23 2023 -0800
    Fix broken table browser for assemblies without a valid 'tableBrowser' setting, refs #30727
• src/hg/cgilib/hvGfx.c
  • lines changed 3, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgBlat/hgBlat.c
  • lines changed 1, context: html, text, full: html, text
    9335d69cb5b504ffbbc44adc6c9e6072d4f3f28e Tue Feb 28 05:49:41 2023 -0800
    small printf change to add the word "genomes" to "search all" on hgBlat, no redmine, email from Brian Lee, I think
• src/hg/hgGene/hgGeneData/Human/links.ra
  • lines changed 3, context: html, text, full: html, text
    20f9fc8ca5fa0f6c31c31529f9aa8608c45c9ac6 Mon Feb 27 13:49:04 2023 -0800
    Removing GCAP links that are no longer there, refs #30695
• src/hg/hgGenome/mainPage.c
  • lines changed 2, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/barChartTrack.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/bigBedTrack.c
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    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/cgapSageTrack.c
  • lines changed 2, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/chainTrack.c
  • lines changed 2, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/expRatioTracks.c
  • lines changed 4, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/gtexEqtlClusterTrack.c
  • lines changed 2, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/gtexTracks.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/halSnakeTrack.c
  • lines changed 2, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/hgTracks.c
  • lines changed 2, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/hicTrack.c
  • lines changed 2, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/interactTrack.c
  • lines changed 11, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/loweLabTracks.c
  • lines changed 3, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
  • lines changed 1, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/pubsTracks.c
  • lines changed 4, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/rnaPLFoldTrack.c
  • lines changed 4, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/simpleTracks.c
  • lines changed 56, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
  • lines changed 3, context: html, text, full: html, text
    e0b7a6700dfca47e0723d2d5a2e5b3c745f51315 Tue Feb 28 12:38:00 2023 -0800
    Fixing a few missed cases for transparency, refs #30569
• src/hg/hgTracks/snake.c
  • lines changed 1, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/hgTracks/variation.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgTracks/vcfTrack.c
  • lines changed 10, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgc/dotPlot.c
  • lines changed 254, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/hgc/dotPlot.h
  • lines changed 9, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/hgc/expClick.c
  • lines changed 1, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/hgc/hgc.c
  • lines changed 3, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
  • lines changed 4, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/hgc/hgc.h
  • lines changed 4, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/hgc/makefile
  • lines changed 1, context: html, text, full: html, text
    13d50002b54653bf8579092e518a479b978ab7fa Fri Mar 3 13:52:56 2023 -0800
    ongoing work on snakes... added optional dotplot for bigPsl hgc pages
• src/hg/htdocs/FAQ/FAQgenes.html
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    dd22c78b55e57f9e6495a2a836b241e94d051a5c Tue Feb 28 10:00:01 2023 -0800
    code review edits, refs #30712
• src/hg/htdocs/cite.html
  • lines changed 2, context: html, text, full: html, text
    675da5af06490a3e2bc744c0a9e1e57b787d85bd Mon Feb 27 17:41:10 2023 -0800
    Clarifying out citations page, no RM.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 1, context: html, text, full: html, text
    7f1d1a448d1c07da4702b3901871d0a37fe6addc Thu Mar 2 16:45:54 2023 -0800
    Adding widget to a few more pages, no RM.
• src/hg/htdocs/redmineWidget.html
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    2208746d8ccc5a89e20029c25378ed35ca099bec Thu Mar 2 16:41:58 2023 -0800
    Changing the widget assignee from QA to me so I notice the MLQs. I'll just take them, we only get like 1/month. No RM.
• src/hg/htdocs/training/index.html
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    7f1d1a448d1c07da4702b3901871d0a37fe6addc Thu Mar 2 16:45:54 2023 -0800
    Adding widget to a few more pages, no RM.
• src/hg/inc/googleAnalytics.h
  • lines changed 3, context: html, text, full: html, text
    3f08e8a24916a75afd749c152097f58344819a3a Thu Mar 2 07:11:02 2023 -0800
    Ignore the previous commit in code review, that was all wrong, I was looking at the wrong analytics page and thought it was working. The GA4 system is entirely different and the code now spread out over five source files. Also: The part of cart.c that outputs the <HEAD> is getting worse and worse. To test the new code, set the analyticsKey to the value in the cgi-bin-max sandbox and go to https://analytics.google.com/analytics/web/#/p356133243/realtime. All staff should have access (if not email me or Lou or Hiram), refs #30725
• src/hg/inc/hvGfx.h
  • lines changed 7, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/lib/cart.c
  • lines changed 20, context: html, text, full: html, text
    ff61568e30e9390cd4d261aa73b2e9f058601af7 Mon Feb 27 10:29:37 2023 -0800
    merge cart hashes if we're merging sessions
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    3f08e8a24916a75afd749c152097f58344819a3a Thu Mar 2 07:11:02 2023 -0800
    Ignore the previous commit in code review, that was all wrong, I was looking at the wrong analytics page and thought it was working. The GA4 system is entirely different and the code now spread out over five source files. Also: The part of cart.c that outputs the <HEAD> is getting worse and worse. To test the new code, set the analyticsKey to the value in the cgi-bin-max sandbox and go to https://analytics.google.com/analytics/web/#/p356133243/realtime. All staff should have access (if not email me or Lou or Hiram), refs #30725
• src/hg/lib/googleAnalytics.c
  • lines changed 12, context: html, text, full: html, text
    11a0f34a70d0afa0c979e7183bd9d54c6b5f636d Wed Mar 1 14:55:03 2023 -0800
    adding support for Analytics 4 tags, refs #30725
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    3f08e8a24916a75afd749c152097f58344819a3a Thu Mar 2 07:11:02 2023 -0800
    Ignore the previous commit in code review, that was all wrong, I was looking at the wrong analytics page and thought it was working. The GA4 system is entirely different and the code now spread out over five source files. Also: The part of cart.c that outputs the <HEAD> is getting worse and worse. To test the new code, set the analyticsKey to the value in the cgi-bin-max sandbox and go to https://analytics.google.com/analytics/web/#/p356133243/realtime. All staff should have access (if not email me or Lou or Hiram), refs #30725
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    2b7011a74947b7d29548ac9cf619dc4781bde4fb Fri Mar 3 07:08:27 2023 -0800
    sending db as an event on hgTracks page load to ga4, refs #30725
• src/hg/lib/hgColors.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/lib/hui.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/lib/liftOver.c
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    bc54347cde3cd33cbfc7427ef9739f8056663795 Wed Mar 1 11:31:01 2023 -0800
    Prevent liftover from thinking colons in bed names mean input is in position format, refs #30705
• src/hg/lib/variantProjector.c
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    1bb425f9fa71e6a0092954afb46e99886e9f3c08 Wed Mar 1 16:26:44 2023 -0800
    Add a check for a boundary condition that so far has appeared only in zebrafish: an insertion that lands (with HGVS right-shifting) at the boundary between an alignment block and *double-sided* gap, i.e. it's not a clean intron gap but instead has skipped over both genomic and transcript sequence. Due to the double-sided gap, vpTx start txOffset > end txOffset (not ==) so vpTxIsInsertion returns false but it's still an insertion in the genome so there is no vpTx->txRef. This was triggering an errAbort; head that off by returning NULL from vpTxSplitByRegion so we just call it complex_transcript_variant, which is all we can say when the transcript aligner is perhaps trying too hard. refs #29262
• src/hg/makeDb/doc/archaeaAsmHub/archaea.orderList.tsv
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    7e1a0c1cd8f284a5b58bf71ea93e69cc926e7c40 Wed Mar 1 18:39:43 2023 -0800
    starting archaea hub per user request refs #29545
• src/hg/makeDb/doc/archaeaAsmHub/hub.txt
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    7e1a0c1cd8f284a5b58bf71ea93e69cc926e7c40 Wed Mar 1 18:39:43 2023 -0800
    starting archaea hub per user request refs #29545
• src/hg/makeDb/doc/archaeaAsmHub/makefile
  • lines changed 27, context: html, text, full: html, text
    7e1a0c1cd8f284a5b58bf71ea93e69cc926e7c40 Wed Mar 1 18:39:43 2023 -0800
    starting archaea hub per user request refs #29545
• src/hg/makeDb/doc/asmHubs/master.run.list
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    7f7facfa700e334643969a32433475dab9327aca Wed Mar 1 18:31:23 2023 -0800
    adding GCA_002204515.1_AaegL5.0 yellow fever mosquito (LVP_AGWG 2017 genbank) per user request refs #29545
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    d2d177b7f1d748268f8181236b249e812093ce3a Wed Mar 1 18:32:58 2023 -0800
    another 72 added to catch up for crispor refs #29545
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    eabc1b9081b27f6a8aeaa4f81dbaea280316fecd Sun Mar 5 13:16:34 2023 -0800
    adding 114 for an update refs #29545
• src/hg/makeDb/doc/evaSnp4.txt
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    df27b8839e9e9d38326e2a25abc9759726949fc2 Thu Mar 2 17:32:09 2023 -0800
    Adding the evaSnp4 makedoc, refs #30320
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    3683a482f97f26e6c08290f6c8acccb764d16eac Thu Mar 2 17:58:16 2023 -0800
    Removing the use of refseq select because the annotations are too sparse. Refs #30320
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
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    7f7facfa700e334643969a32433475dab9327aca Wed Mar 1 18:31:23 2023 -0800
    adding GCA_002204515.1_AaegL5.0 yellow fever mosquito (LVP_AGWG 2017 genbank) per user request refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
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    41cf079e2e3bedb73ced1411f8ddc89dc539791b Sun Mar 5 13:26:03 2023 -0800
    updated Ugandan red Colobus assembly refs #29545
• src/hg/makeDb/makeGencodeKnownGene/makeGencodeKnownGene.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
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    da2ede54254d0ab3fd8647c7793dcd94daefb885 Mon Feb 27 17:25:12 2023 -0800
    Adding sentence to clarify that the name of the conserved track represents, refs #30704
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    96e90b822ba13947bd09480c81f2d1185466557b Mon Feb 27 17:29:38 2023 -0800
    Claryifying the clarification, refs #30704
• src/hg/mouseStuff/mousePoster/mousePoster.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/poster/finPoster/finPoster.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/poster/foldDb/foldDb.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/txGene/txGeneColor/txGeneColor.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/utils/automation/pairLastz.sh
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    7259e79365c1422d424a6fff68f2df549dfdb59a Wed Mar 1 08:46:50 2023 -0800
    might work with hs1 now perhaps no redmine
• src/hg/utils/genePredToBigGenePred/genePredToBigGenePred.c
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/hg/utils/otto/nextstrainNcov/nextstrain.py
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    8e96c1feec31b621eaae7748c43f6a8fb26bf4b5 Fri Mar 3 15:17:21 2023 -0800
    Fixing error that could lead to doubled counts, caught by Jonathan in code review, thanks! refs #30709
• src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml
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    f8d1ee9294ec18a6d876796a23632bfe5292a733 Thu Mar 2 16:57:35 2023 -0800
    Adding a couple more reversions in XBC, pointed out by @corneliusroemer in p-d 1100
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
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    84b64e86349ff055765d58c81cb99f856a6a09ba Thu Mar 2 16:55:00 2023 -0800
    Many new lineages, p-d v1.18.1 and beyond, some corrections & non-Pango labels. * Added B.1.1.529_dropout, BA.1_dropout, BA.2_dropout so I wouldn't have to move labels back manually in lineageTree for pangolin * Removed BA.5.2_no28330 since it's mostly not BA.5.2 (p-d issue 1640) * Corrections: - BQ.1.19: I had erroneously annotated this as BQ.1 > G22599C but it's BQ.1 > T23042C - CM.10: corrected allele for its reversion on 22995 - BN.3.1: I was missing the defining T23031C (S:F490S) at the end - CL.1: resolved some Ns that have cleared up with more sequences - BF.7.14: only S:C1243F is in p-d lineage_notes.txt, don't require G1085T - BA.5.2.50: broaden to not require C884T because it was missing from many seqs, p-d 1542 - BQ.1.1.7: add N to allow C29733T in path, not require reversion - XBF: broaden to not require G625T, p-d 1259
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    e77b309554b2756242db1f54214367d96ac0fc2b Fri Mar 3 15:18:56 2023 -0800
    Oops, missed that C26270T was reverted in CP.7.
• src/hg/utils/otto/uniprot/doUniprot
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    d9ce74c9310f90a8d631e048499434cc6b954f6d Wed Mar 1 06:07:32 2023 -0800
    finally fixing various old uniprot bugs that stopped the update in January and October: now stops if an error occurs, working around a symlink permissions problem, making the release message easier to read, ML ticket, refs #30701
• src/hg/utils/otto/uniprot/doUpdate.sh
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    d9ce74c9310f90a8d631e048499434cc6b954f6d Wed Mar 1 06:07:32 2023 -0800
    finally fixing various old uniprot bugs that stopped the update in January and October: now stops if an error occurs, working around a symlink permissions problem, making the release message easier to read, ML ticket, refs #30701
• src/inc/basicBed.h
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    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/inc/htmshell.h
  • lines changed 3, context: html, text, full: html, text
    3f08e8a24916a75afd749c152097f58344819a3a Thu Mar 2 07:11:02 2023 -0800
    Ignore the previous commit in code review, that was all wrong, I was looking at the wrong analytics page and thought it was working. The GA4 system is entirely different and the code now spread out over five source files. Also: The part of cart.c that outputs the <HEAD> is getting worse and worse. To test the new code, set the analyticsKey to the value in the cgi-bin-max sandbox and go to https://analytics.google.com/analytics/web/#/p356133243/realtime. All staff should have access (if not email me or Lou or Hiram), refs #30725
• src/inc/memgfx.h
  • lines changed 33, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/inc/psGfx.h
  • lines changed 4, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/inc/vGfx.h
  • lines changed 9, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/basicBed.c
  • lines changed 60, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/freeType.c
  • lines changed 7, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/htmshell.c
  • lines changed 11, context: html, text, full: html, text
    3f08e8a24916a75afd749c152097f58344819a3a Thu Mar 2 07:11:02 2023 -0800
    Ignore the previous commit in code review, that was all wrong, I was looking at the wrong analytics page and thought it was working. The GA4 system is entirely different and the code now spread out over five source files. Also: The part of cart.c that outputs the <HEAD> is getting worse and worse. To test the new code, set the analyticsKey to the value in the cgi-bin-max sandbox and go to https://analytics.google.com/analytics/web/#/p356133243/realtime. All staff should have access (if not email me or Lou or Hiram), refs #30725
• src/lib/https.c
  • lines changed 18, context: html, text, full: html, text
    4962afa89e61b42d18d73de459c1227dce78114e Mon Feb 27 20:04:54 2023 -0800
    added more to https domain whitelist from logs
• src/lib/memgfx.c
  • lines changed 60, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/psGfx.c
  • lines changed 52, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/pscmGfx.c
  • lines changed 24, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/vGfx.c
  • lines changed 3, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/lib/vGfxPrivate.h
  • lines changed 1, context: html, text, full: html, text
    b8180d9f6d41dc708a2f249ba892cbca311e7a06 Mon Feb 27 11:38:55 2023 -0800
    Adding transparency support for colors refs #30569
• src/product/installer/browserSetup.sh
  • lines changed 5, context: html, text, full: html, text
    439aca57e3bbd783287b73ba5595e8b16f6fe1e4 Wed Mar 1 09:58:56 2023 -0800
    fixing a few comments in browserSetup.sh, suggested by Jorge, no redmine
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    ce11f3dc682308a48629b7c915cb224d924cd8e8 Mon Mar 6 10:05:56 2023 -0800
    v445 preview2, refs #30708

• lines changed: 2426
• files changed: 94