File Changes for hiram

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v446_preview to v446_preview2 (2023-03-20 to 2023-03-27) v446

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src/hg/hubApi/apiUtils.c
- lines changed 34, context: html, text, full: html, text
  7c04d352647faab3ca7f194dc5f11f764d876ce3 Tue Mar 21 13:44:35 2023 -0700
  adding some chromAlias recognition for some getData functions refs #30544
- lines changed 17, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
- lines changed 2, context: html, text, full: html, text
  7deafd5b94221c04282f275c6d1ccc3b24b53654 Thu Mar 23 14:46:30 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
src/hg/hubApi/dataApi.h
- lines changed 4, context: html, text, full: html, text
  7c04d352647faab3ca7f194dc5f11f764d876ce3 Tue Mar 21 13:44:35 2023 -0700
  adding some chromAlias recognition for some getData functions refs #30544
- lines changed 3, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
src/hg/hubApi/getData.c
- lines changed 16, context: html, text, full: html, text
  7c04d352647faab3ca7f194dc5f11f764d876ce3 Tue Mar 21 13:44:35 2023 -0700
  adding some chromAlias recognition for some getData functions refs #30544
- lines changed 23, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
src/hg/hubApi/tests/expected/chrAlias01.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias02.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias03.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias04.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias05.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias06.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/chrAlias07.gz
- lines changed 0, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
src/hg/hubApi/tests/expected/chrAlias08.gz
- lines changed 0, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
src/hg/hubApi/tests/expected/chrAlias09.gz
- lines changed 0, context: html, text, full: html, text
  665ee1c57639af150db6841dabd0f1d9634f52ed Wed Mar 22 11:14:10 2023 -0700
  add some tests on hs1 refs #30544
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  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
src/hg/hubApi/tests/expected/chrAlias10.gz
- lines changed 0, context: html, text, full: html, text
  46671c77d37fb4c642e84a38c53c6494f56223c5 Thu Mar 23 14:47:42 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 0, context: html, text, full: html, text
  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
src/hg/hubApi/tests/expected/chrAlias11.gz
- lines changed 0, context: html, text, full: html, text
  46671c77d37fb4c642e84a38c53c6494f56223c5 Thu Mar 23 14:47:42 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 0, context: html, text, full: html, text
  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
src/hg/hubApi/tests/expected/err50.gz
- lines changed 0, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
src/hg/hubApi/tests/expected/list19.gz
- lines changed 0, context: html, text, full: html, text
  665ee1c57639af150db6841dabd0f1d9634f52ed Wed Mar 22 11:14:10 2023 -0700
  add some tests on hs1 refs #30544
- lines changed 0, context: html, text, full: html, text
  af9d888d2521227f0df54328fe88f3f85dd15e35 Wed Mar 22 11:27:11 2023 -0700
  remember to have up to date trackDb for best results refs #30544
src/hg/hubApi/tests/expected/list20.gz
- lines changed 0, context: html, text, full: html, text
  665ee1c57639af150db6841dabd0f1d9634f52ed Wed Mar 22 11:14:10 2023 -0700
  add some tests on hs1 refs #30544
- lines changed 0, context: html, text, full: html, text
  af9d888d2521227f0df54328fe88f3f85dd15e35 Wed Mar 22 11:27:11 2023 -0700
  remember to have up to date trackDb for best results refs #30544
src/hg/hubApi/tests/expected/list21.gz
- lines changed 0, context: html, text, full: html, text
  665ee1c57639af150db6841dabd0f1d9634f52ed Wed Mar 22 11:14:10 2023 -0700
  add some tests on hs1 refs #30544
- lines changed 0, context: html, text, full: html, text
  af9d888d2521227f0df54328fe88f3f85dd15e35 Wed Mar 22 11:27:11 2023 -0700
  remember to have up to date trackDb for best results refs #30544
src/hg/hubApi/tests/expected/multiTrack01.gz
- lines changed 0, context: html, text, full: html, text
  665ee1c57639af150db6841dabd0f1d9634f52ed Wed Mar 22 11:14:10 2023 -0700
  add some tests on hs1 refs #30544
src/hg/hubApi/tests/expected/multiTrack02.gz
- lines changed 0, context: html, text, full: html, text
  46671c77d37fb4c642e84a38c53c6494f56223c5 Thu Mar 23 14:47:42 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 0, context: html, text, full: html, text
  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
src/hg/hubApi/tests/expected/multiTrack03.gz
- lines changed 0, context: html, text, full: html, text
  46671c77d37fb4c642e84a38c53c6494f56223c5 Thu Mar 23 14:47:42 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 0, context: html, text, full: html, text
  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
src/hg/hubApi/tests/makefile
- lines changed 48, context: html, text, full: html, text
  7bdaa5393c5e94faf1b70c2018b4d76f1b9951f6 Tue Mar 21 13:41:59 2023 -0700
  adding chrAlias testing refs #30544
- lines changed 2, context: html, text, full: html, text
  255bef7f94a872911184ea049071b1ccbc8983fe Tue Mar 21 13:59:51 2023 -0700
  forgot to reference chrAlias06 refs #30544
- lines changed 20, context: html, text, full: html, text
  0781f49ccdacd52dd75b0f12dab183e4b4cd25fc Tue Mar 21 15:04:48 2023 -0700
  extend the chromAlias function to the getSequence operation refs #30544
- lines changed 40, context: html, text, full: html, text
  e1a1fb5375a5511bd57e4fb67182e7fa8627b37b Wed Mar 22 11:11:50 2023 -0700
  add some tests on hs1 refs #30544
- lines changed 3, context: html, text, full: html, text
  af9d888d2521227f0df54328fe88f3f85dd15e35 Wed Mar 22 11:27:11 2023 -0700
  remember to have up to date trackDb for best results refs #30544
- lines changed 22, context: html, text, full: html, text
  46671c77d37fb4c642e84a38c53c6494f56223c5 Thu Mar 23 14:47:42 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 1, context: html, text, full: html, text
  3d2b88aa010e09690c6c595a9820f449c6b71ab4 Thu Mar 23 14:48:12 2023 -0700
  using bigBedFileOpenAlias in place of bigBedFileOpen supplies alias functions for mixed and match tracks with different naming authorities refs #30544
- lines changed 5, context: html, text, full: html, text
  ca9bb0fbc8288f6decc353a0d106870fdab1663c Thu Mar 23 15:04:30 2023 -0700
  remember to ignore hub.txt path for different sandboxes refs #30544
- lines changed 4, context: html, text, full: html, text
  40c3e555affbd16d650932d9ae626443f42bbc5b Thu Mar 23 15:14:49 2023 -0700
  add to the help message refs #30544
src/hg/inc/chromAlias.h
- lines changed 2, context: html, text, full: html, text
  eb4b6546550cba82f0031c043ee4f55bdbec8c30 Tue Mar 21 13:43:21 2023 -0700
  expose chromAliasSetupBb for use in hubApi refs #30544
src/hg/lib/chromAlias.c
- lines changed 1, context: html, text, full: html, text
  eb4b6546550cba82f0031c043ee4f55bdbec8c30 Tue Mar 21 13:43:21 2023 -0700
  expose chromAliasSetupBb for use in hubApi refs #30544
src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 17, context: html, text, full: html, text
  de78b5ec01fe83fa8534377e991d83ade368df48 Mon Mar 20 18:08:13 2023 -0700
  catching up 17 NPRC assemblies refs #30508
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  75f69eb021fdf446bc56f02afb6fd9056d7b7361 Wed Mar 22 08:15:56 2023 -0700
  HPRC and addition from user request refs #29545
- lines changed 4, context: html, text, full: html, text
  e333353435bde66c659754f02966057bf191b515 Wed Mar 22 15:19:28 2023 -0700
  a couple of assemblies per user request refs #29545
- lines changed 22, context: html, text, full: html, text
  8fe411406aaca63524a93f863ff29d0b47d2a631 Sat Mar 25 13:55:56 2023 -0700
  catching up HPRC and a user request refs #30508
- lines changed 13, context: html, text, full: html, text
  db54d5b0929f100f355612d2744d9f5643689edb Mon Mar 27 09:58:51 2023 -0700
  HPRC almost done refs #30508
src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  2386edc9931a5f930ff78dddf751dd96c1d6b43d Wed Mar 22 15:48:32 2023 -0700
  adding one per user request refs #29545
- lines changed 1, context: html, text, full: html, text
  ed866720a585eac35edb86496962b06889122c9e Sat Mar 25 17:14:01 2023 -0700
  adding one per user request refs #29545
src/hg/makeDb/doc/bosTau9/lastzRuns.txt
- lines changed 89, context: html, text, full: html, text
  2fd3b8fcf0d2e0e4e2315ddcd66f2a94d8987e74 Tue Mar 21 11:11:06 2023 -0700
  lastz to GCF_003369695.1 refs #30648
src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
- lines changed 2, context: html, text, full: html, text
  de29d7985da36f9e65d856791f1c99aa487c9364 Wed Mar 22 15:44:10 2023 -0700
  adding a couple per user request refs #29545
src/hg/makeDb/doc/hprcAsmHub/hprc.orderList.tsv
- lines changed 12, context: html, text, full: html, text
  8c663f648d8952a49347e8857309782d9adef067 Mon Mar 20 11:36:41 2023 -0700
  continuing updates refs #30508
- lines changed 17, context: html, text, full: html, text
  22bcbc17f3431b952f802716b45082da8500054a Mon Mar 20 11:40:32 2023 -0700
  continuing updates refs #30508
- lines changed 1, context: html, text, full: html, text
  3bacf328f27fe1a429d3afbfb48446f3bd8a5bb4 Wed Mar 22 10:00:06 2023 -0700
  catching up HPRC additions refs #30508
- lines changed 1, context: html, text, full: html, text
  8a03b43bb5d418295a0fb655ec65277010567694 Wed Mar 22 16:18:38 2023 -0700
  another HPRC to the lot refs #20508
- lines changed 15, context: html, text, full: html, text
  33a753e917fa5230b34bcc058b691f02e5871727 Mon Mar 27 10:09:30 2023 -0700
  HPRC almost done refs #30508
src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
- lines changed 1, context: html, text, full: html, text
  538ed99276c513f39375bfd4b94ad61b2831d368 Wed Mar 22 09:25:29 2023 -0700
  per user request GCF_028408465.1_idAnaLude1.1 Mexican fruit fly (Willacy primary hap 2023) refs #29545
src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
- lines changed 17, context: html, text, full: html, text
  a2a3bb0fc32b8bcca665243b252d64b75b6f5f7d Mon Mar 20 18:08:56 2023 -0700
  catching up 17 NPRC assemblies refs #30508
- lines changed 1, context: html, text, full: html, text
  00a242f29b93e3718825540e0fbf9e446ffb2fb1 Wed Mar 22 09:43:03 2023 -0700
  continue adding HPRC assembly refs #30508
- lines changed 1, context: html, text, full: html, text
  9de2ca240f6ad68c544630a86f518051c4f7a0bc Wed Mar 22 16:14:19 2023 -0700
  another HPRC to the lot refs #20508
- lines changed 13, context: html, text, full: html, text
  52e73de9b2a157e02e07eaecaba957ce2ce579d2 Mon Mar 27 10:05:00 2023 -0700
  HPRC almost done refs #30508

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