All File Changes

v446_base to v447_preview (2023-04-03 to 2023-04-10) v447

• src/hg/hgGateway/hgGateway.c
  • lines changed 4, context: html, text, full: html, text
    8a78199eaca4cb4996a056fdb69d1824ec89aed1 Mon Apr 3 11:28:33 2023 -0700
    Explicitly set the CGI variable 'org' when doing an hgGateway ucsc db lookup, refs #30816
• src/hg/hgPcr/hgPcr.c
  • lines changed 14, context: html, text, full: html, text
    9a71e97d8a11e25bc6e48e8e95fa0c9cc7da4801 Tue Apr 4 11:59:28 2023 -0700
    hgPcr saves hits instead of overwriting the trash file with each new pcr search, refs #30925
• src/hg/hgSession/hgSession.c
  • lines changed 4, context: html, text, full: html, text
    4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700
    Change recommended track sets to merge with the current session. refs #28525
• src/hg/hgTables/mainPage.c
  • lines changed 2, context: html, text, full: html, text
    f74544cee2a18705f3aad180178c0ec23b8beeda Thu Apr 6 11:35:26 2023 -0700
    Fix JASPAR tracks not allowed in tableBrowser, refs #31034
• src/hg/hgTracks/chainTrack.c
  • lines changed 2, context: html, text, full: html, text
    510ec86d77710a8670b5276a8eea40f3d6ab74cc Fri Apr 7 12:16:08 2023 -0700
    tweak bigChain support to work with snakes. Change UI option to use the words "rearrangement graph" instead of snake
• src/hg/hgTracks/hgTracks.c
  • lines changed 5, context: html, text, full: html, text
    3dbf5323c70384a8a0b4f9004cfe3485b4d57342 Mon Apr 3 12:19:25 2023 -0700
    don't create the squishy track in squishyPack mode if it's going to be empty.
  • lines changed 55, context: html, text, full: html, text
    4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700
    Change recommended track sets to merge with the current session. refs #28525
  • lines changed 2, context: html, text, full: html, text
    2be85c9badc07c275552f8af45543b8ae6fb7cc0 Sat Apr 8 15:53:11 2023 -0700
    new merge recommended track set tech is (once again) under hg.conf control
• src/hg/hgTracks/recTrackSets.c
  • lines changed 16, context: html, text, full: html, text
    4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700
    Change recommended track sets to merge with the current session. refs #28525
  • lines changed 0, context: html, text, full: html, text
    f8d8ca673a50a4c0870e011d9d208cd85112bf89 Fri Apr 7 11:30:30 2023 -0700
    some small tweaks to the recommended track set code (don't hide tracks that are hidden in the current session if they're specifically turned on in the RTS)
  • lines changed 18, context: html, text, full: html, text
    2be85c9badc07c275552f8af45543b8ae6fb7cc0 Sat Apr 8 15:53:11 2023 -0700
    new merge recommended track set tech is (once again) under hg.conf control
• src/hg/hgc/hgc.c
  • lines changed 1, context: html, text, full: html, text
    a9b80f86a7140be06f51ed1f550f1a88a17bb32b Thu Apr 6 13:49:17 2023 -0700
    Coloring DNA by bigBeds should work even if only later blocks intersect the window, refs #31029
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 3, context: html, text, full: html, text
    2ffb313fbbddc5b678beb8a92da4d513c178268d Tue Apr 4 07:09:11 2023 -0700
    got question from Jim R why long sequences do not work from IGV, so adding note to FAQ blat that HTTP POST is required for that, no redmine
• src/hg/htdocs/goldenPath/help/trackDb/changes.html
  • lines changed 66, context: html, text, full: html, text
    50944e3cc9736155738c9721bd4c1525f6d08d97 Tue Apr 4 08:04:28 2023 -0700
    adding trackDb changes html and adding downloadUrl docs to trackDb doc, refs #30904
  • lines changed 10, context: html, text, full: html, text
    39e79d98451699372d3a161d3cdf23220db5605a Wed Apr 5 02:58:22 2023 -0700
    most recent changes come first, refs #30904
• src/hg/htdocs/goldenPath/help/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    50944e3cc9736155738c9721bd4c1525f6d08d97 Tue Apr 4 08:04:28 2023 -0700
    adding trackDb changes html and adding downloadUrl docs to trackDb doc, refs #30904
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 8, context: html, text, full: html, text
    50944e3cc9736155738c9721bd4c1525f6d08d97 Tue Apr 4 08:04:28 2023 -0700
    adding trackDb changes html and adding downloadUrl docs to trackDb doc, refs #30904
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 12, context: html, text, full: html, text
    50944e3cc9736155738c9721bd4c1525f6d08d97 Tue Apr 4 08:04:28 2023 -0700
    adding trackDb changes html and adding downloadUrl docs to trackDb doc, refs #30904
• src/hg/hubApi/apiUtils.c
  • lines changed 24, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
  • lines changed 17, context: html, text, full: html, text
    57ad409a6278ef6a75e2c082988ed1ee419a5f78 Fri Apr 7 11:35:09 2023 -0700
    now allowing argument format=text on list files output refs #23589
  • lines changed 16, context: html, text, full: html, text
    763252113893b5fa89e1b08a8a306e396770592a Fri Apr 7 12:47:11 2023 -0700
    correct header output for plain text and add comment lines as per standard JSON output, TODO: manage error outputs refs #23589
• src/hg/hubApi/dataApi.h
  • lines changed 14, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
  • lines changed 7, context: html, text, full: html, text
    57ad409a6278ef6a75e2c082988ed1ee419a5f78 Fri Apr 7 11:35:09 2023 -0700
    now allowing argument format=text on list files output refs #23589
• src/hg/hubApi/hubApi.c
  • lines changed 5, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
  • lines changed 1, context: html, text, full: html, text
    57ad409a6278ef6a75e2c082988ed1ee419a5f78 Fri Apr 7 11:35:09 2023 -0700
    now allowing argument format=text on list files output refs #23589
• src/hg/hubApi/list.c
  • lines changed 111, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
  • lines changed 97, context: html, text, full: html, text
    57ad409a6278ef6a75e2c082988ed1ee419a5f78 Fri Apr 7 11:35:09 2023 -0700
    now allowing argument format=text on list files output refs #23589
  • lines changed 1, context: html, text, full: html, text
    763252113893b5fa89e1b08a8a306e396770592a Fri Apr 7 12:47:11 2023 -0700
    correct header output for plain text and add comment lines as per standard JSON output, TODO: manage error outputs refs #23589
• src/hg/hubApi/tests/expected/err07.gz
  • lines changed 0, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
• src/hg/hubApi/tests/expected/err09.gz
  • lines changed 0, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
• src/hg/hubApi/tests/expected/err10.gz
  • lines changed 0, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
• src/hg/hubApi/tests/expected/list03.gz
  • lines changed 0, context: html, text, full: html, text
    eabb83a3bb858d06c2329802c9ad4131a908e78b Thu Apr 6 14:35:59 2023 -0700
    ce11 now has hg38 chain track refs #23589
• src/hg/hubApi/tests/expected/list09.gz
  • lines changed 0, context: html, text, full: html, text
    eabb83a3bb858d06c2329802c9ad4131a908e78b Thu Apr 6 14:35:59 2023 -0700
    ce11 now has hg38 chain track refs #23589
• src/hg/hubApi/tests/expected/list22.gz
  • lines changed 0, context: html, text, full: html, text
    2df046ea76491116b288c27a6fc91d6b3e84f7ee Thu Apr 6 14:48:44 2023 -0700
    adding tests for /list/files function db and GenArk genome refs #23589
  • lines changed 0, context: html, text, full: html, text
    39aeb562a83a5d024984c793a7338e33083b498f Fri Apr 7 12:56:37 2023 -0700
    adding tests for /list/files with maxItemsOutput and format=text options refs #23589
• src/hg/hubApi/tests/expected/list23.gz
  • lines changed 0, context: html, text, full: html, text
    2df046ea76491116b288c27a6fc91d6b3e84f7ee Thu Apr 6 14:48:44 2023 -0700
    adding tests for /list/files function db and GenArk genome refs #23589
  • lines changed 0, context: html, text, full: html, text
    39aeb562a83a5d024984c793a7338e33083b498f Fri Apr 7 12:56:37 2023 -0700
    adding tests for /list/files with maxItemsOutput and format=text options refs #23589
• src/hg/hubApi/tests/expected/list24.gz
  • lines changed 0, context: html, text, full: html, text
    39aeb562a83a5d024984c793a7338e33083b498f Fri Apr 7 12:56:37 2023 -0700
    adding tests for /list/files with maxItemsOutput and format=text options refs #23589
• src/hg/hubApi/tests/expected/list25.gz
  • lines changed 0, context: html, text, full: html, text
    39aeb562a83a5d024984c793a7338e33083b498f Fri Apr 7 12:56:37 2023 -0700
    adding tests for /list/files with maxItemsOutput and format=text options refs #23589
• src/hg/hubApi/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    9cc4ce16befd7694963bdb46b6e9b4d28a6930cc Thu Apr 6 14:29:04 2023 -0700
    adding endpoint /list/files function to list hgdownload files refs #23589
  • lines changed 13, context: html, text, full: html, text
    2df046ea76491116b288c27a6fc91d6b3e84f7ee Thu Apr 6 14:48:44 2023 -0700
    adding tests for /list/files function db and GenArk genome refs #23589
  • lines changed 14, context: html, text, full: html, text
    39aeb562a83a5d024984c793a7338e33083b498f Fri Apr 7 12:56:37 2023 -0700
    adding tests for /list/files with maxItemsOutput and format=text options refs #23589
• src/hg/inc/cart.h
  • lines changed 7, context: html, text, full: html, text
    4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700
    Change recommended track sets to merge with the current session. refs #28525
• src/hg/js/hgGateway.js
  • lines changed 7, context: html, text, full: html, text
    8a78199eaca4cb4996a056fdb69d1824ec89aed1 Mon Apr 3 11:28:33 2023 -0700
    Explicitly set the CGI variable 'org' when doing an hgGateway ucsc db lookup, refs #30816
• src/hg/js/hgTracks.js
  • lines changed 2, context: html, text, full: html, text
    36ea90d6191e1adfa028b0f7258fce42f2955050 Tue Apr 4 16:42:21 2023 -0700
    Adding some bolding to highlight parts of the message, refs #30591
• src/hg/lib/cart.c
  • lines changed 45, context: html, text, full: html, text
    4d2eb49f84199890ac7e679ba67f094cb49bd124 Thu Apr 6 14:29:02 2023 -0700
    Change recommended track sets to merge with the current session. refs #28525
  • lines changed 16, context: html, text, full: html, text
    f8d8ca673a50a4c0870e011d9d208cd85112bf89 Fri Apr 7 11:30:30 2023 -0700
    some small tweaks to the recommended track set code (don't hide tracks that are hidden in the current session if they're specifically turned on in the RTS)
• src/hg/lib/hui.c
  • lines changed 25, context: html, text, full: html, text
    7bd47bcce94043cc307b78f981363b5d9d24a970 Wed Apr 5 05:06:38 2023 -0700
    allowing multiple download URLs and allowing quotes, refs #30904
  • lines changed 5, context: html, text, full: html, text
    510ec86d77710a8670b5276a8eea40f3d6ab74cc Fri Apr 7 12:16:08 2023 -0700
    tweak bigChain support to work with snakes. Change UI option to use the words "rearrangement graph" instead of snake
• src/hg/lib/tests/expected/hgvs/validTerms.txt
  • lines changed 2, context: html, text, full: html, text
    d4424ec80aa5d9a43bce853331da08932a7c4e94 Tue Apr 4 10:02:40 2023 -0700
    fix hgvsTest
• src/hg/lib/tests/input/hgvs/validTerms.txt
  • lines changed 1, context: html, text, full: html, text
    d4424ec80aa5d9a43bce853331da08932a7c4e94 Tue Apr 4 10:02:40 2023 -0700
    fix hgvsTest
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 24, context: html, text, full: html, text
    6495d1c198950df4012b38356c734716f034f4ca Wed Apr 5 13:47:03 2023 -0700
    finished up HPRC and continuing CCGP refs #30508
  • lines changed 15, context: html, text, full: html, text
    2a4aa562c332332ac0bb21bdc10f564d7022bbf5 Fri Apr 7 13:31:40 2023 -0700
    continue adding CCGP genome browsers refs #30912
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 8, context: html, text, full: html, text
    7af99fba157b9b57be6317a713a2064f8a242740 Wed Apr 5 15:19:17 2023 -0700
    adding 7 CCGP assemblies refs #30912
  • lines changed 3, context: html, text, full: html, text
    42f85d1985de90df0b8d6888dad0edd0ab6f315d Fri Apr 7 13:59:01 2023 -0700
    adding three for CCGP refs #30912
• src/hg/makeDb/doc/ccgpAsmHub/ccgp.orderList.tsv
  • lines changed 25, context: html, text, full: html, text
    67acf4489044ecb0ae388000d82ed54f12f5c207 Fri Apr 7 14:26:10 2023 -0700
    catching up completed CCGP assemblies refs #30912
• src/hg/makeDb/doc/ccgpAsmHub/ccgp.taxId.asmId.class.txt
  • lines changed 2, context: html, text, full: html, text
    bb32c5cb690a1aed9ad0660b89c8ca2260a3bbcc Fri Apr 7 14:35:16 2023 -0700
    catching up two missed before refs #30912
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    fd66a1ec1128f13b9e2ca96c151ff6b7fafc40db Wed Apr 5 15:26:54 2023 -0700
    adding one from CCGP refs #30912
  • lines changed 3, context: html, text, full: html, text
    fce661f760040f46c9a7b9dcad35b1f56bb633dd Fri Apr 7 14:10:15 2023 -0700
    adding 3 for CCGP refs #30912
• src/hg/makeDb/doc/hg38/hprcLastz.txt
  • lines changed 1098, context: html, text, full: html, text
    0842d5714831ed96499cb0e5c69a2f5f78a1de13 Tue Apr 4 09:55:15 2023 -0700
    continue lastz runs for HPRC genomes to hg38 refs #30508
  • lines changed 1012, context: html, text, full: html, text
    0d6e74b5c4f8a5c5aa4465d6fb5551dec1fc3841 Wed Apr 5 16:27:34 2023 -0700
    catching up with completed lastz/chain/net refs #30912
  • lines changed 92, context: html, text, full: html, text
    ca5e96d3ef0bc2d2f995a912dc4f7b5fdf432e4e Wed Apr 5 16:46:20 2023 -0700
    catching up with completed lastz/chain/net refs #30912
  • lines changed 1104, context: html, text, full: html, text
    5ed537d9f4f1883a4596f278c9c13cb7816df964 Thu Apr 6 15:07:58 2023 -0700
    catching up with completed lastz/chain/net refs #30912
  • lines changed 34, context: html, text, full: html, text
    9a9b4e595e833b4f0f52875567b7e68c7f2270b8 Thu Apr 6 15:10:55 2023 -0700
    catching up with completed lastz/chain/net refs #30912
  • lines changed 92, context: html, text, full: html, text
    722f05d417cfe7733d360889b901f4d54c4a38dc Thu Apr 6 15:23:14 2023 -0700
    eliminate a duplicate entry refs #30912
  • lines changed 4508, context: html, text, full: html, text
    e263797cef1d906754ad02475540f35528b92e63 Mon Apr 10 07:45:39 2023 -0700
    almost done HPRC lastz runs refs #30912
  • lines changed 184, context: html, text, full: html, text
    0a532517e84e7897ed50f2ea333134daaa1387c0 Mon Apr 10 07:49:48 2023 -0700
    one HPRC lastz run outstanding refs #30912
  • lines changed 92, context: html, text, full: html, text
    b390872e7b2543685b9bd8e301099c38935bcc1d Mon Apr 10 08:12:30 2023 -0700
    last one has completed refs #30912
• src/hg/makeDb/doc/hg38/variation.txt
  • lines changed 10, context: html, text, full: html, text
    0c7fee255303c1f274b1133ae232d73d14478021 Fri Apr 7 14:20:49 2023 -0700
    Staging the new DGV gold track and adding a mouseOvers to other DGV tracks, refs #30908, #30909
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 9, context: html, text, full: html, text
    eda51609835cc537c7284e5ec44b7ae08e343e7d Fri Apr 7 14:08:55 2023 -0700
    catching up CCGP assemblies refs #30912
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    3f75f2912bd5dcfdcfa4e4ef4f27e17970bb76a0 Wed Apr 5 16:47:57 2023 -0700
    adding one for CCGP refs #30912
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    8e449f42069370b1d0c0884e943c1ad7f1aa2cde Wed Apr 5 15:44:58 2023 -0700
    adding 2 from CCGP refs #30912
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    fbf619e3e0dc16ece1838ebdc8b613e49edbccb7 Fri Apr 7 13:45:51 2023 -0700
    adding one for the CCGP project refs #30912
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    5b270f8510130fbd83cea83cb4a4e3b9937c2bca Wed Apr 5 15:45:46 2023 -0700
    adding 3 from CCGP refs #30912
  • lines changed 4, context: html, text, full: html, text
    5e55032b06e858e91b7baf8441d80d3007356655 Fri Apr 7 14:02:15 2023 -0700
    adding 4 for CCGP refs #30912
• src/hg/makeDb/trackDb/human/dgvPlus.html
  • lines changed 20, context: html, text, full: html, text
    0c7fee255303c1f274b1133ae232d73d14478021 Fri Apr 7 14:20:49 2023 -0700
    Staging the new DGV gold track and adding a mouseOvers to other DGV tracks, refs #30908, #30909
• src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra
  • lines changed 2, context: html, text, full: html, text
    bded802193207bc4fd7ab1f7a9bc31d8c3069231 Fri Apr 7 14:26:02 2023 -0700
    Fixing up the mouseOvers for DGV track, refs #30909
• src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
  • lines changed 2, context: html, text, full: html, text
    7bd47bcce94043cc307b78f981363b5d9d24a970 Wed Apr 5 05:06:38 2023 -0700
    allowing multiple download URLs and allowing quotes, refs #30904
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    716ab63e2843d3390d0a35d1979322da877a3410 Wed Apr 5 15:52:44 2023 -0700
    Adding beta to release tag, refs #29954
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    0c7fee255303c1f274b1133ae232d73d14478021 Fri Apr 7 14:20:49 2023 -0700
    Staging the new DGV gold track and adding a mouseOvers to other DGV tracks, refs #30908, #30909
  • lines changed 2, context: html, text, full: html, text
    bded802193207bc4fd7ab1f7a9bc31d8c3069231 Fri Apr 7 14:26:02 2023 -0700
    Fixing up the mouseOvers for DGV track, refs #30909
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    7bd47bcce94043cc307b78f981363b5d9d24a970 Wed Apr 5 05:06:38 2023 -0700
    allowing multiple download URLs and allowing quotes, refs #30904
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 30, context: html, text, full: html, text
    80ef5aceda1a2e29e3e1e654c8de191848405cda Fri Apr 7 10:23:32 2023 -0700
    tolerate ebiGene for HPRC project refs #30508
• src/hg/utils/automation/pairLastz.sh
  • lines changed 43, context: html, text, full: html, text
    2332b3a609d7fc057db833551347b1be5f2555b4 Fri Apr 7 10:19:16 2023 -0700
    show total run time and construct trackDb when possible in the GenArk hub no redmine
• src/hg/utils/rts/dumpSessions
  • lines changed 2, context: html, text, full: html, text
    13c0977119e845ccce3568a58a8c5d0c22093565 Thu Apr 6 14:31:15 2023 -0700
    spme tests for making a tool that scrubs recommended track sets refs #28525
• src/hg/utils/rts/fixSessions
  • lines changed 11, context: html, text, full: html, text
    13c0977119e845ccce3568a58a8c5d0c22093565 Thu Apr 6 14:31:15 2023 -0700
    spme tests for making a tool that scrubs recommended track sets refs #28525
• src/hg/utils/rts/loadSessions
  • lines changed 14, context: html, text, full: html, text
    13c0977119e845ccce3568a58a8c5d0c22093565 Thu Apr 6 14:31:15 2023 -0700
    spme tests for making a tool that scrubs recommended track sets refs #28525
• src/hg/utils/rts/verboten.lst
  • lines changed 6, context: html, text, full: html, text
    13c0977119e845ccce3568a58a8c5d0c22093565 Thu Apr 6 14:31:15 2023 -0700
    spme tests for making a tool that scrubs recommended track sets refs #28525
• src/inc/pipeline.h
  • lines changed 5, context: html, text, full: html, text
    2c3e2050ff776ba94c746ebf007d17db7edd1998 Thu Apr 6 09:45:12 2023 -0700
    updated pipelineOpen function documentation to clear describe otherEndFile argument
• src/jkOwnLib/gfPcrLib.c
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    9a71e97d8a11e25bc6e48e8e95fa0c9cc7da4801 Tue Apr 4 11:59:28 2023 -0700
    hgPcr saves hits instead of overwriting the trash file with each new pcr search, refs #30925
• src/lib/pipeline.c
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    64435c8709f85a481ae55ab6ef76639fc7becba8 Thu Apr 6 12:09:05 2023 -0700
    don't close stdin/stdout of pipeline if they were not opened by by the pipeline
• src/lib/psGfx.c
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    f947acce83460c48e4412a8c501decb67a9587cd Thu Apr 6 00:04:19 2023 -0700
    Good idea to close the pipeline when you're done with it (thanks Hiram), no ticket
• src/lib/tests/makefile
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    31e39c3d3240d8ed700eeef434f62ca625d8c231 Thu Apr 6 11:03:44 2023 -0700
    make sure test bin directory exists when running tests individually
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    64435c8709f85a481ae55ab6ef76639fc7becba8 Thu Apr 6 12:09:05 2023 -0700
    don't close stdin/stdout of pipeline if they were not opened by by the pipeline
• src/lib/tests/pipelineTester.c
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    64435c8709f85a481ae55ab6ef76639fc7becba8 Thu Apr 6 12:09:05 2023 -0700
    don't close stdin/stdout of pipeline if they were not opened by by the pipeline
• src/utils/bigGuessDb/bigGuessDb
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    05561c4b23fbcf412ab896628db14146f9802143 Tue Apr 4 06:00:14 2023 -0700
    improving bigGuessDb a little before sending off to NCBI, refs #30316
• src/utils/bigGuessDb/tests/expected/hg19.txt
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    05561c4b23fbcf412ab896628db14146f9802143 Tue Apr 4 06:00:14 2023 -0700
    improving bigGuessDb a little before sending off to NCBI, refs #30316
• src/utils/bigGuessDb/tests/expected/mm10.best.txt
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    05561c4b23fbcf412ab896628db14146f9802143 Tue Apr 4 06:00:14 2023 -0700
    improving bigGuessDb a little before sending off to NCBI, refs #30316
• src/utils/bigGuessDb/tests/expected/mm10.txt
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    05561c4b23fbcf412ab896628db14146f9802143 Tue Apr 4 06:00:14 2023 -0700
    improving bigGuessDb a little before sending off to NCBI, refs #30316
• src/utils/bigGuessDb/tests/makefile
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    05561c4b23fbcf412ab896628db14146f9802143 Tue Apr 4 06:00:14 2023 -0700
    improving bigGuessDb a little before sending off to NCBI, refs #30316
• src/utils/qa/weeklybld/buildEnv.csh
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    b2b70ba202dd0859847d1b6f83b7b12cceabf0c6 Mon Apr 10 10:14:00 2023 -0700
    v447 preview1, refs #31044

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