File Changes for galt

v476_preview2 to v476_base (2025-01-06 to 2025-01-13) v476

• src/hg/hgBlat/hgBlat.c
  • lines changed 1, context: html, text, full: html, text
    5c3c3701e278cac3d79ab818baeb952cc5df3d10 Fri Jan 10 00:29:14 2025 -0800
    fixing minor void * declare from code review feedback.
  • lines changed 1, context: html, text, full: html, text
    048d0dcf99a55daf4dbec3c9f39decafe81b2c5c Fri Jan 10 12:47:51 2025 -0800
    fix compiler complaint of nightly util build.
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    5c3c3701e278cac3d79ab818baeb952cc5df3d10 Fri Jan 10 00:29:14 2025 -0800
    fixing minor void * declare from code review feedback.
  • lines changed 1, context: html, text, full: html, text
    048d0dcf99a55daf4dbec3c9f39decafe81b2c5c Fri Jan 10 12:47:51 2025 -0800
    fix compiler complaint of nightly util build.
• src/hg/hgTracks/searchTracks.c
  • lines changed 1, context: html, text, full: html, text
    5c3c3701e278cac3d79ab818baeb952cc5df3d10 Fri Jan 10 00:29:14 2025 -0800
    fixing minor void * declare from code review feedback.
  • lines changed 1, context: html, text, full: html, text
    048d0dcf99a55daf4dbec3c9f39decafe81b2c5c Fri Jan 10 12:47:51 2025 -0800
    fix compiler complaint of nightly util build.
• src/hg/hgc/gencodeClick.c
  • lines changed 13, context: html, text, full: html, text
    2e9a42eb1791472834ee9e90467eab183e8586fc Fri Jan 10 01:30:43 2025 -0800
    code review feedback. fixed compiler warning in hgc gencodeClick.
• src/hg/hgc/hgc.c
  • lines changed 18, context: html, text, full: html, text
    7cf33ee882ae64d20b55f50698bf6d0da1c28a3a Fri Jan 10 01:53:04 2025 -0800
    fixes based on Braneys helpful feedback.
• src/hg/lib/customFactory.c
  • lines changed 1, context: html, text, full: html, text
    5c3c3701e278cac3d79ab818baeb952cc5df3d10 Fri Jan 10 00:29:14 2025 -0800
    fixing minor void * declare from code review feedback.
  • lines changed 1, context: html, text, full: html, text
    048d0dcf99a55daf4dbec3c9f39decafe81b2c5c Fri Jan 10 12:47:51 2025 -0800
    fix compiler complaint of nightly util build.
• src/htslib/hts.c
  • lines changed 1, context: html, text, full: html, text
    fda94da6315d3cbcd541a8580870dad45697b2bc Fri Jan 10 00:57:53 2025 -0800
    Revert "fixing compiler warnings for htslib compiling Rocky 9 hgwdev-new." This reverts commit cde73cd256f16555d283a8e7539e946e63151ede.
  • lines changed 1, context: html, text, full: html, text
    7ec42d4b6eb8a815b95b7af131150b7e4a5569cd Fri Jan 10 01:02:32 2025 -0800
    Reapply "fixing compiler warnings for htslib compiling Rocky 9 hgwdev-new." This reverts commit fda94da6315d3cbcd541a8580870dad45697b2bc.
• src/htslib/sam.c
  • lines changed 3, context: html, text, full: html, text
    fda94da6315d3cbcd541a8580870dad45697b2bc Fri Jan 10 00:57:53 2025 -0800
    Revert "fixing compiler warnings for htslib compiling Rocky 9 hgwdev-new." This reverts commit cde73cd256f16555d283a8e7539e946e63151ede.
  • lines changed 3, context: html, text, full: html, text
    7ec42d4b6eb8a815b95b7af131150b7e4a5569cd Fri Jan 10 01:02:32 2025 -0800
    Reapply "fixing compiler warnings for htslib compiling Rocky 9 hgwdev-new." This reverts commit fda94da6315d3cbcd541a8580870dad45697b2bc.
• src/inc/common.mk
  • lines changed 3, context: html, text, full: html, text
    37e6df88ac99518cc699a378d3ca405af19fbb68 Thu Jan 9 23:34:36 2025 -0800
    One final bit allows -static compile now on hgwdev-new. Sadly, it had some issues still.
  • lines changed 8, context: html, text, full: html, text
    614bfb99ad0bd183574f839e1fb2d589b004c81c Fri Jan 10 01:20:12 2025 -0800
    Brian in code review asked me to reverse these changes on hgwdev, however they were working just fine. May restore them soon.
  • lines changed 0, context: html, text, full: html, text
    46558d202e8e7978e90e920441879fb2f2d99897 Fri Jan 10 17:40:06 2025 -0800
    Revert "broken build extra space sonLib .a no redmine" This reverts commit 5d3f8e7077604794f7eef4181971e7ab1f901216.
  • lines changed 9, context: html, text, full: html, text
    86ea800458384a01b483a3c1587641883b901510 Fri Jan 10 17:40:24 2025 -0800
    Revert "Brian in code review asked me to reverse these changes on hgwdev, however they were working just fine. May restore them soon." This reverts commit 614bfb99ad0bd183574f839e1fb2d589b004c81c.
  • lines changed 10, context: html, text, full: html, text
    1f0f06ed4995b90bd4336fc87cb8beda20ca39b7 Fri Jan 10 18:20:48 2025 -0800
    fix for hgwdev-new to use /cluster/software/r9 for specially compiled R9 libs instead of /culster/sofware which has been correctly recompield for R7 libs. So now both hggwdev and hgwdev-new are correct and not mixed up for compiling.
• src/parasol/lib/paraMessage.c
  • lines changed 4, context: html, text, full: html, text
    f727e7c1325f863157c57d88ba0a1c3cf65b1478 Sat Jan 11 16:19:08 2025 -0800
    fix for overflowing packet issue when paraHub restarts but most jobs are run on just one node.
• src/parasol/paraNode/paraNode.c
  • lines changed 30, context: html, text, full: html, text
    f727e7c1325f863157c57d88ba0a1c3cf65b1478 Sat Jan 11 16:19:08 2025 -0800
    fix for overflowing packet issue when paraHub restarts but most jobs are run on just one node.