Commits for lrnassar

v477_preview to v477_preview2 (2025-01-21 to 2025-01-27) v477

079452db1366f3fdeac159871bf2950ffc8fb48b Tue Jan 21 16:46:20 2025 -0800

• Adding setColorWith settings to all the docs. Refs #34958
  • src/hg/htdocs/goldenPath/help/bigWig.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 18, context: html, text, full: html, text

9cbe13e094cb2e7362a6c86e323e04e9496d4452 Tue Jan 21 16:55:23 2025 -0800

• Fixing a tissue mRNA outlink that was broken, refs #34890
  • src/hg/makeDb/trackDb/human/hg38/miRnaAtlas.html - lines changed 1, context: html, text, full: html, text

53cec0e344d474d5d46039f46bd3ecaab57d79b5 Tue Jan 21 17:10:19 2025 -0800

• Removing wuhCor1 from the dropdown menu, refs #34992
  • src/hg/htdocs/inc/gbPageStartHardcoded.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/inc/globalNavBar.inc - lines changed 1, context: html, text, full: html, text

d545453f0d97807bb471417a70e4a15db50fbe2a Wed Jan 22 12:28:51 2025 -0800

• Fixing a small bug where if the hub URL was http but the query to their server failed, it would still try to initialize text=f.txt even though the request never worked. The FTP example already had it in the proper location. No RM.
  • src/utils/qa/hubPublicMail - lines changed 2, context: html, text, full: html, text

8b1cb57aefa7b685016b223c6ccc23f6ba9555d7 Wed Jan 22 16:54:55 2025 -0800

• Feedback from CR, refs #35113
  • docs/index.md - lines changed 1, context: html, text, full: html, text

16c6d21c4dcd64186a91638db6a2241d7d3807e4 Thu Jan 23 14:21:57 2025 -0800

• Updating python version needed for some imports.
  • src/hg/utils/otto/otto.crontab - lines changed 1, context: html, text, full: html, text

66a5094b52b1b49a14b72ddd612f6f08257f4c92 Fri Jan 24 11:03:50 2025 -0800

• Staging the VarChat track, refs #35081
  • src/hg/makeDb/doc/hg19.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/varChat.txt - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varChat.html - lines changed 95, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/varsInPubs.html - lines changed 13, context: html, text, full: html, text

0acf7bb36b85100c30813e4c07a41a5b7e6b185b Fri Jan 24 11:08:31 2025 -0800

• I forgot to commit this page when I first staged the track, refs #34930
  • src/hg/makeDb/trackDb/human/TFrPeakClusters.html - lines changed 90, context: html, text, full: html, text

7046bad2efe40b36e3ebd4999e6caf30223ef0d1 Fri Jan 24 11:09:55 2025 -0800

• Merging Jeltje's changes to my tree, these were done to add colors to the alphaMissense bigWig, refs #32269
  • src/hg/makeDb/scripts/wigColorByColors/makeWigColorByRevelCadd.py - lines changed 13, context: html, text, full: html, text