Commits for lrnassar

v494_preview to v494_preview2 (2026-02-12 to 2026-02-09) v494

cf3b8d0618e5ea5763b9968a68601055973e4a2f Tue Feb 3 15:12:57 2026 -0800

• Add a checker to see if a file URL can be opened (otherwise hubClone just fails on it), and an optional flag that forces it to continue regardless of missing trackDb.txt files. Refs #36264
  • src/hg/utils/hubClone/hubClone.c - lines changed 227, context: html, text, full: html, text

7ef879fbbd36899c1f4107701d0e2be658344c0b Wed Feb 4 16:35:54 2026 -0800

• Staging the JASPAR 2026 track update, refs #36264
  • src/hg/makeDb/doc/hg38/jaspar.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/jaspar.html - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/jaspar.ra - lines changed 16, context: html, text, full: html, text

a328f4122a06272bb3d76a1f8297e8f5f264e70e Thu Feb 5 16:51:06 2026 -0800

• First draft of the human methylation atlas track, refs #36826
  • src/hg/makeDb/doc/hg38/humanMethylationAtlas.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/scripts/humanMethylationAtlas/humanMethylationAtlas_setup.py - lines changed 636, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/dnaMethylation.html - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/humanMethylationAtlas.html - lines changed 185, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/methylationAtlasSignals.ra - lines changed 3673, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 11, context: html, text, full: html, text

6722ba1af10cd31bf218f24430f54dc3e0f30b39 Thu Feb 5 16:52:32 2026 -0800

• Fixing the wrong script link, refs #36826
  • src/hg/makeDb/doc/hg38/humanMethylationAtlas.txt - lines changed 1, context: html, text, full: html, text

60410f74b7cbc4fbad91bcdbe4e0276e44d936ee Fri Feb 6 09:51:04 2026 -0800

• Tweaks to the methylation atlas track based on author feedback, refs #36826
  • src/hg/makeDb/trackDb/human/dnaMethylation.html - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/humanMethylationAtlas.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra - lines changed 3, context: html, text, full: html, text

55b9303aff371358646c4310c5201d30afd38cf3 Fri Feb 6 12:34:22 2026 -0800

• Fixing typo, refs #36704
  • src/hg/hgTracks/hgTracks.c - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)