Commits for gperez2

v503_preview2 to v503_base (2026-08-24 to 2026-08-31) v503

8ddc3930661eeb43c7483f7e3f43f189100d6d86 Mon Aug 24 23:49:57 2026 -0700

• Updating release tags to beta for the gnomAD v4.1.1 tracks and updating the Transcript Missense v4.1.1 mouseOver, refs #37351
  • src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.alpha.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 8, context: html, text, full: html, text

e59cff1f1f78e393e66bd65db33c30b60be835ca Mon Aug 24 23:50:26 2026 -0700

• Updating the gnomadMpc v4.1.1 longLabel, refs #37478
  • src/hg/makeDb/trackDb/human/hg38/gnomadMpc.ra - lines changed 1, context: html, text, full: html, text

1524ca6f78d40d477144943e182b6ab616c6216e Wed Aug 26 16:50:17 2026 -0700

• Releasing the gnomAD v4.1.1 tracks. Removed the release tags from the gnomadVariantsV4.1 v4.1.1 stanza, deleted the old v4.1 stanza, and merged gnomad.constraint.alpha.ra/gnomad.constraint.public.ra into gnomad.constraint.ra. refs #37351
  • src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.public.ra - lines changed 178, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

e1f1369eff4f4330846e6ddd7e6cd01c855e871b Wed Aug 26 17:04:14 2026 -0700

• Releasing the gnomAD MPC tracks. Removed the alpha,beta tag from the gnomadMpc.ra include. refs #37478
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

9dae2176099f0f0db44ea88b2707fa73b664aa37 Wed Aug 26 17:45:10 2026 -0700

• Completing the release for the gnomAD v4.1.1 tracks: adding a pennantIcon and removing release tags and deleted old v4.1 stanza that were missed by an earlier commit. refs #37351
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 86, context: html, text, full: html, text

cf87c27669523cb325d1d2d52e11e6f18d24504e Wed Aug 26 18:36:04 2026 -0700

• Announcing the gnomAD v4.1.1 and MPC tracks. Adding pennantIcons to the new and updated tracks. refs #38166 refs #37351 refs #37478
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 50, context: html, text, full: html, text
  • src/hg/htdocs/images/newsArchImages/gnomadV4.1.1_MPC.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.constraint.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomadMpc.ra - lines changed 2, context: html, text, full: html, text

9227df124b0a433a7b05eb5367ba33589998dcc0 Wed Aug 26 20:18:16 2026 -0700

• Fixing a misspelled name in the gnomAD v4.1.1 announcement credits: Caitlin Samocha to Kaitlin Samocha. refs #38166
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

2740c034d0cb877c9bd055c5a897fa458d458bfa Wed Aug 26 20:38:59 2026 -0700

• Defining the MPC acronym per Bob's feedback, and pluralizing "track" to "tracks", in the gnomAD v4.1.1 announcement. refs #38166
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 2, context: html, text, full: html, text

02d76e6afae0e40826dc8eeff4272544841036c3 Thu Aug 27 00:54:50 2026 -0700

• Fixing "exomes and genomes variants" to "exome and genome variants" in the gnomAD v4.1.1 announcement image caption. refs #38166
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

304aeae270067c5854358e2c4475ea34419dfec7 Thu Aug 27 17:59:26 2026 -0700

• Updating hgLogin's buttons, form labels, and two error messages to sentence case matching the Track QA Guidelines wiki page, refs #37929
  • src/hg/hgLogin/hgLogin.c - lines changed 13, context: html, text, full: html, text

b6d6aa7d68b7a1e9a1ad74508f2fc25b68f72e50 Fri Aug 28 11:15:39 2026 -0700

• Updating hgLogin's account activation error message to plain language, refs #37929
  • src/hg/hgLogin/hgLogin.c - lines changed 1, context: html, text, full: html, text

1147e5e78e17c3c47d7e625fe4d80f8f3f88b48b Fri Aug 28 13:16:15 2026 -0700

• Updating hgLogin's "choose a username" page to inform that a new account is created, refs #37929
  • src/hg/hgLogin/hgLogin.c - lines changed 14, context: html, text, full: html, text

90908c5b29e3ea47dc5b3088d46a60b6ba09eefb Sun Aug 30 13:41:37 2026 -0700

• Updating the My Track Hubs link in the account popup to go to Connected Hubs instead of Hub Upload. refs #36267
  • src/hg/js/topLinks.js - lines changed 1, context: html, text, full: html, text