File Changes for hiram

v490_preview2 to v490_base (2025-10-27 to 2025-11-03) v490

• src/hg/lib/fasTAN.as
  • lines changed 9, context: html, text, full: html, text
    0987ef2a57422e1b7a0227b9abd7fadac942e2e8 Fri Oct 31 15:36:18 2025 -0700
    bed file definition of the output from FasTAN
  • lines changed 1, context: html, text, full: html, text
    8c9fa3d2aef3a6cd7681748602fc303842196f5e Fri Oct 31 15:46:47 2025 -0700
    correct possessive
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 2, context: html, text, full: html, text
    207b18d3428f769b443fb13c35fdfc3af2444936 Wed Oct 29 09:56:14 2025 -0700
    raise CPU limit to 12 for the chain step refs #36546
  • lines changed 2, context: html, text, full: html, text
    e24709a4ec08445450979b1ba907671aafacc13c Wed Oct 29 09:56:14 2025 -0700
    raise memory limit to 12G for the chain step refs #36546
  • lines changed 1, context: html, text, full: html, text
    b9326c31b78f235181798c5df993f610db395049 Wed Oct 29 10:59:37 2025 -0700
    raise memory limit to 12G for the chain step refs #36546
  • lines changed 2, context: html, text, full: html, text
    163e38242d3cd8d004882cfef7a557c9944f59e3 Wed Oct 29 11:24:47 2025 -0700
    default cluster should be hgwdev not obsolete ku refs #36546
• src/hg/utils/automation/doFasTAN.pl
  • lines changed 300, context: html, text, full: html, text
    64f5aaf6b778b991cadb76a605325760cef3fd71 Fri Oct 31 15:25:00 2025 -0700
    Adding Gene Meyers' FasTAN tandem repeat finder procedure
  • lines changed 1, context: html, text, full: html, text
    582e3e62507cc29716f2d19896a4ba90d927ce53 Fri Oct 31 15:32:13 2025 -0700
    Correct Myers name spelling
  • lines changed 6, context: html, text, full: html, text
    39c14307224404251ce37952391cc6b7babea0f7 Fri Oct 31 15:47:31 2025 -0700
    with specific fasTAN.as schema definition
• src/hg/utils/automation/doLongdust.pl
  • lines changed 275, context: html, text, full: html, text
    f7b43908c094bc252185289d72755b4f55b0f623 Wed Oct 29 16:45:30 2025 -0700
    beginning of an auto script to run the longdust procedure on an assembly
  • lines changed 16, context: html, text, full: html, text
    6e7e7ed56bc4de54088e81e32068fb14c4dfaac3 Thu Oct 30 11:44:32 2025 -0700
    may be complete at this time
  • lines changed 4, context: html, text, full: html, text
    a02fe4b3289da1d30d52ba60b769644e9a3d8454 Thu Oct 30 12:51:55 2025 -0700
    correct start up for the bedResult step
  • lines changed 11, context: html, text, full: html, text
    afb5dbee2256da1db93064340dcf4508aee3955f Fri Oct 31 14:26:41 2025 -0700
    needs to have a db argument and write out a version.txt file
  • lines changed 1, context: html, text, full: html, text
    b6999503af29255b9956d018763bdc6b46965d36 Fri Oct 31 14:42:29 2025 -0700
    more cleanup
• src/hg/utils/otto/genArk/pushFromBetaToRR.sh
  • lines changed 47, context: html, text, full: html, text
    773fabd8bcd1acc5bdcc5dc27ef7fba3c8050c76 Tue Oct 28 11:13:34 2025 -0700
    script to use by cluster admin to push out from hgwbeta to the RR refs #35575
• src/hg/utils/otto/genArk/pushNewOnes.sh
  • lines changed 23, context: html, text, full: html, text
    1be49dce000ce111f3d1a81b4aef086e6d579f4c Mon Oct 27 16:43:09 2025 -0700
    reset the scripts to only push from hgwdev to hgwbeta refs #35575
• src/hg/utils/otto/genArk/quickLiftNew.sh
  • lines changed 46, context: html, text, full: html, text
    1be49dce000ce111f3d1a81b4aef086e6d579f4c Mon Oct 27 16:43:09 2025 -0700
    reset the scripts to only push from hgwdev to hgwbeta refs #35575
• src/hg/utils/otto/genArk/whatIsNew.sh
  • lines changed 45, context: html, text, full: html, text
    1be49dce000ce111f3d1a81b4aef086e6d579f4c Mon Oct 27 16:43:09 2025 -0700
    reset the scripts to only push from hgwdev to hgwbeta refs #35575