Commits for hiram

v492_preview2 to v492_base (2025-12-08 to 2025-12-15) v492

3fc0af6f1eaa0286ec5242b6caf6c3ede1382402 Mon Dec 8 11:58:38 2025 -0800

• correct label on ftp link to NCBI fasta resource per Max request
  • src/hg/utils/automation/asmHubGatewayPage.pl - lines changed 1, context: html, text, full: html, text

83dbcadd73270e8b652fb4b5537235ca5727c7fa Mon Dec 8 16:22:38 2025 -0800

• fix the toga click code to use a simple local hideToggle class refs #35776
  • src/hg/hgc/togaClick.c - lines changed 61, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgc.js - lines changed 12, context: html, text, full: html, text

bddb262e29ccaea9bdf08d393f81375c66e5abb6 Mon Dec 8 16:29:59 2025 -0800

• fix the toga click code to use a simple local hideToggle class refs #35776
  • src/hg/hgc/togaClick.c - lines changed 9, context: html, text, full: html, text

0be7b604dc94f877a813c77d1caffb6caa5ff267 Wed Dec 10 11:06:58 2025 -0800

• improved prompt tags for the expandable sectios refs #35776
  • src/hg/hgc/togaClick.c - lines changed 34, context: html, text, full: html, text
  • src/hg/js/hgc.js - lines changed 4, context: html, text, full: html, text

7b23fe64bffb549f7a7ade1642d30cf9896c1bfa Wed Dec 10 12:43:29 2025 -0800

• Adding VEuPathDb contrib tracks
  • src/hg/makeDb/trackDb/betaGenArk.txt - lines changed 1, context: html, text, full: html, text

f345e1c69072f76c484b0ad82423f059a0fff9df Wed Dec 10 13:35:24 2025 -0800

• do not need the extra print of chromAuthority
  • src/hg/makeDb/doc/asmHubs/mkGenomes.pl - lines changed 1, context: html, text, full: html, text

65071c1d6cc890e6ad0d23ab3addc13dac6e3a8b Wed Dec 10 20:34:55 2025 -0800

• document that schema for the hgcentral genarkOrg table refs #36213
  • src/hg/lib/genarkOrg.sql - lines changed 10, context: html, text, full: html, text

3185383caf8fdd492637985e969758f0d8cf2e79 Thu Dec 11 14:12:48 2025 -0800

• adding a couple of user requests refs #29545
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 3, context: html, text, full: html, text

d4d334d54107b89bcc07cbf4684749ccadee31fe Thu Dec 11 14:20:38 2025 -0800

• only copy groups.txt if it is actually different refs #29545
  • src/hg/makeDb/doc/asmHubs/asmHubs.mk - lines changed 6, context: html, text, full: html, text

9431ca8ba35a97885ab78a6a4fa997e05d68fd12 Thu Dec 11 15:26:16 2025 -0800

• can not use the genome-test.soe.ucsc.edu/kent.git server outside UCSC environment refs #36817
  • src/userApps/fetchKentSource.sh - lines changed 47, context: html, text, full: html, text

4a6bbaefd4ad57f0176334fb017c9aed253c0f4c Thu Dec 11 15:28:52 2025 -0800

• can not use the genome-test.soe.ucsc.edu/kent.git server outside UCSC environment refs #36817
  • src/userApps/README - lines changed 12, context: html, text, full: html, text

ad4e4b66fe4aeec66d13d5ce01bbaf03f148c9f8 Fri Dec 12 17:46:52 2025 -0800

• updated text for version 2 refs #35776
  • src/hg/makeDb/trackDb/TOGAv2.html - lines changed 86, context: html, text, full: html, text