All File Changes

v492_preview to v492_preview2 (2025-12-01 to 2025-12-08) v492

• confs/asia.hg.conf
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    14b0f6b564ca152fe006f81589b7dba1966cb9d5 Sun Dec 7 01:11:19 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
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    14b0f6b564ca152fe006f81589b7dba1966cb9d5 Sun Dec 7 01:11:19 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
  • lines changed 1, context: html, text, full: html, text
    14b0f6b564ca152fe006f81589b7dba1966cb9d5 Sun Dec 7 01:11:19 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 1, context: html, text, full: html, text
    14b0f6b564ca152fe006f81589b7dba1966cb9d5 Sun Dec 7 01:11:19 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 3, context: html, text, full: html, text
    14b0f6b564ca152fe006f81589b7dba1966cb9d5 Sun Dec 7 01:11:19 2025 -0800
    Installing updated hg.conf files from UCSC servers
• docs/gb101.html
  • lines changed 118, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/hubs/hubBasics.md
  • lines changed 331, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/index.md
  • lines changed 13, context: html, text, full: html, text
    1b7e3e5a0cac8f9cfe7257f16582c06d25187926 Fri Dec 5 17:38:13 2025 -0800
    Basic placeholder for new landing page, refs #28347
• docs/makefile
  • lines changed 30, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/new_home.html
  • lines changed 103, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/staticPage.html
  • lines changed 10, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/staticPage.lua
  • lines changed 1, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/tutorials/gatewayTutorial.md
  • lines changed 13, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/tutorials/gb101.md
  • lines changed 22, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/tutorials/index.md
  • lines changed 0, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• docs/tutorials/tableBrowserTutorial.md
  • lines changed 9, context: html, text, full: html, text
    82b12a5fae1c82dffe13401e09749849d116e724 Fri Dec 5 17:27:44 2025 -0800
    Making major changes to the markdown /docs/ directory since we are going to keep adding to it. Starting with adding more heirarchy, also had to update the makefile and staticPage.lua to reference the correct root path for the CSS. Also had to update all of the relative links in the pages so far in order to make them absolute paths for easier implementation. Lastly, adding the new hubBasics page which is the first in the new hubs subdir. Refs #28347
• src/hg/cgilib/haplotypes.c
  • lines changed 1, context: html, text, full: html, text
    ef1483b9dbef46e678f0e4d95f70bdeb61951b18 Thu Dec 4 10:57:38 2025 -0800
    fixes population button in common haplotype section in hgGene
• src/hg/hgGateway/hgGateway.html
  • lines changed 3, context: html, text, full: html, text
    bb36bf5df3f8ac20e6686d133a53f427ccd05721 Wed Dec 3 16:10:08 2025 -0800
    Add link to position search box examples page to hgSearch and hgGateway, refs #35336
• src/hg/hgGene/hgGene.c
  • lines changed 10, context: html, text, full: html, text
    d430ed42b69dc955443169c3ea4f4157ff66fe84 Thu Dec 4 10:50:24 2025 -0800
    get default hidden hgGene sections to open properly
• src/hg/hgGene/hgGeneData/Human/hg19/section.ra
  • lines changed 1, context: html, text, full: html, text
    1ffc37d2d2a54bf74b983443c28b26edf105c288 Tue Dec 2 16:38:36 2025 -0800
    turn gene alleles on by default
  • lines changed 1, context: html, text, full: html, text
    c18e63286391967a0ff9ad129a1a5126f3e73b84 Thu Dec 4 10:51:53 2025 -0800
    Revert "turn gene alleles on by default" This reverts commit 1ffc37d2d2a54bf74b983443c28b26edf105c288.
• src/hg/hgSearch/hgSearch.c
  • lines changed 8, context: html, text, full: html, text
    9266c869b3ff3f5829cd406e11a1315a6822d565 Thu Dec 4 12:28:41 2025 -0800
    When doing an HGVS search that is not from the auto-suggestions, if the term resolves, save it to the search stack so it will show up in the recent searches list, refs #35984
• src/hg/hgTables/filterFields.c
  • lines changed 5, context: html, text, full: html, text
    518ff4cfa71efd85556346f2d01a24f88a773aa9 Tue Dec 2 17:13:33 2025 -0800
    Fixes missing field descriptions for mm39 knownGene. fixes #32209
• src/hg/hgTables/mainPage.c
  • lines changed 3, context: html, text, full: html, text
    88f3a1a6fe7166978044b5929316f75448643734 Fri Dec 5 14:41:40 2025 -0800
    Jonathan code review. Not wanting to have to add a list of exceptional tables. Restoring original line from Brian Raney. refs #36784,#36524
• src/hg/hgTables/pal.c
  • lines changed 1, context: html, text, full: html, text
    22d5ed169d378a1fbc1b5f76488771be106c9b1f Wed Dec 3 17:19:19 2025 -0800
    Allows bigGenePred to used like genePred and provide CDS FASTA output from Table Browser. fixes #34712
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 4, context: html, text, full: html, text
    141f698576f7b9f88861d533c847a93153b39d05 Wed Dec 3 19:52:35 2025 -0800
    Feeback from Code review with Jonathan, fixes hgFindMatches for loadGV. refs #36738
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    1a2aef3c877e9a8e365da31b63acde9032bd01bc Wed Dec 3 12:50:09 2025 -0800
    Make gene alleles section of hgGene show up when doing hgGene in a pop up, refs #36770
  • lines changed 3, context: html, text, full: html, text
    141f698576f7b9f88861d533c847a93153b39d05 Wed Dec 3 19:52:35 2025 -0800
    Feeback from Code review with Jonathan, fixes hgFindMatches for loadGV. refs #36738
• src/hg/hgTracks/hgTracks.h
  • lines changed 2, context: html, text, full: html, text
    141f698576f7b9f88861d533c847a93153b39d05 Wed Dec 3 19:52:35 2025 -0800
    Feeback from Code review with Jonathan, fixes hgFindMatches for loadGV. refs #36738
• src/hg/hgTracks/simpleTracks.c
  • lines changed 4, context: html, text, full: html, text
    141f698576f7b9f88861d533c847a93153b39d05 Wed Dec 3 19:52:35 2025 -0800
    Feeback from Code review with Jonathan, fixes hgFindMatches for loadGV. refs #36738
• src/hg/hgc/togaClick.c
  • lines changed 71, context: html, text, full: html, text
    ffab4ecbdda06b66cf091326108670702e498d0e Fri Dec 5 11:16:22 2025 -0800
    new toga click code from Michaerl Hiller for version 2 TOGA refs #35776
• src/hg/hgc/togaClick.h
  • lines changed 5, context: html, text, full: html, text
    ffab4ecbdda06b66cf091326108670702e498d0e Fri Dec 5 11:16:22 2025 -0800
    new toga click code from Michaerl Hiller for version 2 TOGA refs #35776
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 2, context: html, text, full: html, text
    b653d5ce539938ef5135e8650f922c5ec7f9ad5e Fri Dec 5 15:18:44 2025 -0800
    adding link to orderKey form trackDb docs; adding id to orderKey element and removing repetitive text in track hub help, refs #25243
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 2, context: html, text, full: html, text
    89c69500ae6ce997047f59a264c6a9327aaef8d2 Fri Dec 5 03:27:09 2025 -0800
    small update to build instructions, no redmine
• src/hg/htdocs/goldenPath/help/oligoMatch.html
  • lines changed 123, context: html, text, full: html, text
    83fd535ffd08aac398121175c71d9b9554c0eee1 Thu Dec 4 10:51:30 2025 -0800
    adding a few example motifs to short match track, no redmine
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 1, context: html, text, full: html, text
    b653d5ce539938ef5135e8650f922c5ec7f9ad5e Fri Dec 5 15:18:44 2025 -0800
    adding link to orderKey form trackDb docs; adding id to orderKey element and removing repetitive text in track hub help, refs #25243
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 31, context: html, text, full: html, text
    59fb440ba930a3f0eaee0af6e7fe6a2526b10551 Wed Dec 3 11:49:31 2025 -0800
    More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
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    e7e1e5f0e9e4e242f19f4e04856c94574cbec7a7 Wed Dec 3 13:26:29 2025 -0800
    An edit to the gnomAD MPC newsarch, refs #36531
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    68ea606bd8b97ea67c4a1dfd558fbb8f8b1c5a69 Thu Dec 4 16:10:26 2025 -0800
    Staging the announcement for hubSpace. Commenting the announcement out until hubTools is released, refs #36290
• src/hg/htdocs/images/newsArchImages/gnomAD_mpc.png
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    59fb440ba930a3f0eaee0af6e7fe6a2526b10551 Wed Dec 3 11:49:31 2025 -0800
    More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
• src/hg/htdocs/inc/hgSearch.html
  • lines changed 1, context: html, text, full: html, text
    bb36bf5df3f8ac20e6686d133a53f427ccd05721 Wed Dec 3 16:10:08 2025 -0800
    Add link to position search box examples page to hgSearch and hgGateway, refs #35336
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    59fb440ba930a3f0eaee0af6e7fe6a2526b10551 Wed Dec 3 11:49:31 2025 -0800
    More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
• src/hg/htdocs/style/shepherd.css
  • lines changed 229, context: html, text, full: html, text
    a1247ee4544f573cb20ad82d83cddfadb2f9577d Tue Dec 2 14:47:56 2025 -0800
    Feeding the CSS file into Claude so the file is in a more human readible format, refs #34354
  • lines changed 5, context: html, text, full: html, text
    d78cf5974051daa4a48a8195c8aaf754d4757edb Tue Dec 2 16:11:49 2025 -0800
    Adding a new style of button for loading the examples in the hgCustom tutorial. Making it so the button does nothing after clicking it the first time. refs #34354
  • lines changed 1, context: html, text, full: html, text
    9ce60ff1bd117ef5fe9b3765fdba61c8d68d1159 Tue Dec 2 16:44:39 2025 -0800
    Making the optional not italic. Fixing a typo (teh) and adding a paragraph break, refs #34354
• src/hg/inc/web.h
  • lines changed 7, context: html, text, full: html, text
    d430ed42b69dc955443169c3ea4f4157ff66fe84 Thu Dec 4 10:50:24 2025 -0800
    get default hidden hgGene sections to open properly
• src/hg/js/alleles.js
  • lines changed 6, context: html, text, full: html, text
    1a2aef3c877e9a8e365da31b63acde9032bd01bc Wed Dec 3 12:50:09 2025 -0800
    Make gene alleles section of hgGene show up when doing hgGene in a pop up, refs #36770
• src/hg/js/hgTracks.js
  • lines changed 1, context: html, text, full: html, text
    1a2aef3c877e9a8e365da31b63acde9032bd01bc Wed Dec 3 12:50:09 2025 -0800
    Make gene alleles section of hgGene show up when doing hgGene in a pop up, refs #36770
  • lines changed 2, context: html, text, full: html, text
    8b5388e586385a67f6175b7bcb678342c90cbfae Fri Dec 5 12:25:04 2025 -0800
    Prevent toga tracks from doing hgc in popups, refs #36805
• src/hg/js/tutorials/customTrackTutorial.js
  • lines changed 97, context: html, text, full: html, text
    d78cf5974051daa4a48a8195c8aaf754d4757edb Tue Dec 2 16:11:49 2025 -0800
    Adding a new style of button for loading the examples in the hgCustom tutorial. Making it so the button does nothing after clicking it the first time. refs #34354
  • lines changed 5, context: html, text, full: html, text
    9ce60ff1bd117ef5fe9b3765fdba61c8d68d1159 Tue Dec 2 16:44:39 2025 -0800
    Making the optional not italic. Fixing a typo (teh) and adding a paragraph break, refs #34354
  • lines changed 5, context: html, text, full: html, text
    f0173cf9b2305fab980f47c8ed07f32642c53036 Tue Dec 2 17:03:34 2025 -0800
    Disabling the genome selection menu so you aren't taken away from hg19, refs #34354
  • lines changed 11, context: html, text, full: html, text
    16824517cc89b9acd936de3c17c3c48d64d0afc9 Tue Dec 2 17:15:40 2025 -0800
    Disabling hyperlink clicks. Disabling clicking on the results page, refs #34354
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    48e64c1e21d90b822aef8b11a2eabfb44321dd50 Wed Dec 3 16:34:13 2025 -0800
    Updating the toggleSelects function to accept a DOM element. Disabling buttons so you aren't taken away from the tutorial by clicking the button it is explaining, refs #34354
• src/hg/js/utils.js
  • lines changed 1, context: html, text, full: html, text
    002e60c59c18ca1d87c6e980278a0a8a523425a4 Tue Dec 2 12:42:34 2025 -0800
    Wait until DOMContentLoaded to convert title tags to mouseovers, because the browserTextSize variable will not be set yet otherwise. Make tooltip text size determination default to 12 if no saved text size or no browserTextSize available yet, refs #36754
• src/hg/lib/hui.c
  • lines changed 6, context: html, text, full: html, text
    002e60c59c18ca1d87c6e980278a0a8a523425a4 Tue Dec 2 12:42:34 2025 -0800
    Wait until DOMContentLoaded to convert title tags to mouseovers, because the browserTextSize variable will not be set yet otherwise. Make tooltip text size determination default to 12 if no saved text size or no browserTextSize available yet, refs #36754
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    5602c6f4da7d31d02fcf849c6dce1ef329cca3ef Tue Dec 2 12:58:41 2025 -0800
    bigBeds with less than five fields with filters should show them on the hgTrackUi page
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    9f7cf671abc2cf3179d3fc945129d290d87470ff Wed Dec 3 17:59:58 2025 -0800
    Suggested by Jonathan from code review, refs #34544
• src/hg/lib/web.c
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    d430ed42b69dc955443169c3ea4f4157ff66fe84 Thu Dec 4 10:50:24 2025 -0800
    get default hidden hgGene sections to open properly
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
  • lines changed 1, context: html, text, full: html, text
    a7cc8f8b8547b215cd4d25147e38aea308913b82 Fri Dec 5 17:27:03 2025 -0800
    checkin long standing debug print statement
• src/hg/makeDb/doc/hg38/varFreqs.txt
  • lines changed 8, context: html, text, full: html, text
    676b58d841804f049f720cc9ba3fddec216dae61 Tue Dec 2 06:22:46 2025 -0800
    adding saudi arabia to variant frequencies track
• src/hg/makeDb/scripts/saudiToVcf.py
  • lines changed 45, context: html, text, full: html, text
    676b58d841804f049f720cc9ba3fddec216dae61 Tue Dec 2 06:22:46 2025 -0800
    adding saudi arabia to variant frequencies track
• src/hg/makeDb/trackDb/TOGAv2.html
  • lines changed 85, context: html, text, full: html, text
    18327e879f9df894313dd3100084c94cc6dd4136 Fri Dec 5 11:03:40 2025 -0800
    track definitions for TOGA version 2 refs #35776
• src/hg/makeDb/trackDb/human/hg19/gnomadMpc.html
  • lines changed 13, context: html, text, full: html, text
    971ae4b10f79d994d419c94d932e5b9163b72098 Tue Dec 2 10:39:58 2025 -0800
    Updating the Display Conventions and Configuration section for gnomAD MPC, refs #36531
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    b34331f456005e4f28bb0d095c081b50d94f7ebd Tue Dec 2 10:59:48 2025 -0800
    Updating the text for the gnomAD MPC, refs #36531
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    59fb440ba930a3f0eaee0af6e7fe6a2526b10551 Wed Dec 3 11:49:31 2025 -0800
    More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 2, context: html, text, full: html, text
    59fb440ba930a3f0eaee0af6e7fe6a2526b10551 Wed Dec 3 11:49:31 2025 -0800
    More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
• src/hg/makeDb/trackDb/human/varFreqs.html
  • lines changed 23, context: html, text, full: html, text
    676b58d841804f049f720cc9ba3fddec216dae61 Tue Dec 2 06:22:46 2025 -0800
    adding saudi arabia to variant frequencies track
• src/hg/makeDb/trackDb/human/varFreqs.ra
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    cf0688e553609456a5bcd2968034cb98e37be877 Tue Dec 2 05:16:45 2025 -0800
    small updated for Finngen
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    7e008fe9bc0fd5adbba182fd74adfc4b8fbd5fca Thu Dec 4 13:46:14 2025 -0800
    no need to define HLTOGAannotvsHg38v1 here, it is at the top level refs #35776
• src/hg/makeDb/trackDb/toga2.ra
  • lines changed 163, context: html, text, full: html, text
    18327e879f9df894313dd3100084c94cc6dd4136 Fri Dec 5 11:03:40 2025 -0800
    track definitions for TOGA version 2 refs #35776
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    a419c78d2f26b51f510fcce2f973c94c0c4beb99 Fri Dec 5 11:09:55 2025 -0800
    TOGA V2 shortLabel refs #35576
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    6b57700763a45c9826c241399e125d1b4c25b8cb Sun Dec 7 22:08:27 2025 -0800
    everything for toga2 shoiuld be in /TOGAv2/ directory under gbdb refs #35776
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    18327e879f9df894313dd3100084c94cc6dd4136 Fri Dec 5 11:03:40 2025 -0800
    track definitions for TOGA version 2 refs #35776
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 10, context: html, text, full: html, text
    16311d16d3c24281f59bcba6d8c4e6b548cd6ad1 Tue Dec 2 12:09:52 2025 -0800
    on advice from Terence and NCBI fixup the track label on gene models track that is not from RefSeq
• src/hg/utils/automation/pairLastz.sh
  • lines changed 1, context: html, text, full: html, text
    8f49f3cafc739447cdee936784c69d70065996e3 Thu Dec 4 10:59:47 2025 -0800
    remove unnecessary in incorrect setting Qarget from runSwap.sh
• src/hg/utils/otto/clinvar/clinVarToBed
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    46bdaa51aa44a800eda5961cd2a9ff3c3c700869 Wed Dec 3 10:11:00 2025 -0800
    Fixing a typo from code review, refs #36786
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    66d4db32ebb42c4b5005e6c39a733bc1b75457d0 Mon Dec 8 08:06:52 2025 -0800
    fixing clinvar bigbed type bug, refs #36810
• src/hg/utils/otto/clinvar/clinvarSubLolly
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    66d4db32ebb42c4b5005e6c39a733bc1b75457d0 Mon Dec 8 08:06:52 2025 -0800
    fixing clinvar bigbed type bug, refs #36810
• src/hg/utils/otto/clinvar/doUpdate.sh
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    66d4db32ebb42c4b5005e6c39a733bc1b75457d0 Mon Dec 8 08:06:52 2025 -0800
    fixing clinvar bigbed type bug, refs #36810
• src/product/mirrorManual.txt
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    89c69500ae6ce997047f59a264c6a9327aaef8d2 Fri Dec 5 03:27:09 2025 -0800
    small update to build instructions, no redmine
• src/userApps/README
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    0f3294dcf8499c108ecca546a1df60debaa628af Wed Dec 3 09:46:08 2025 -0800
    Our git archive use needs a git:// URL, no ticket
• src/userApps/fetchKentSource.sh
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    0f3294dcf8499c108ecca546a1df60debaa628af Wed Dec 3 09:46:08 2025 -0800
    Our git archive use needs a git:// URL, no ticket
• src/utils/qa/checkStaticDocsDiff.py
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    93f7f9e49078d2ad71f0b73f4d56b211d36a57b5 Mon Dec 8 09:17:23 2025 -0800
    Adding python script that reports differences in static HTML docs across hgwdev/hgwbeta/hgw0, refs #35294
• src/utils/qa/makefile
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    953908311427465877fb3d27ae8e9dc2469e71ac Wed Dec 3 17:39:14 2025 -0800
    Adding a new cron script that will report CAPTCHA bypass usage, refs #36797
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    93f7f9e49078d2ad71f0b73f4d56b211d36a57b5 Mon Dec 8 09:17:23 2025 -0800
    Adding python script that reports differences in static HTML docs across hgwdev/hgwbeta/hgw0, refs #35294
• src/utils/qa/reportCaptchaBypass.py
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    953908311427465877fb3d27ae8e9dc2469e71ac Wed Dec 3 17:39:14 2025 -0800
    Adding a new cron script that will report CAPTCHA bypass usage, refs #36797

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