All File Changes

v479_preview to v479_preview2 (2025-03-03 to 2025-03-10) v479

• confs/asia.hg.conf
  • lines changed 1, context: html, text, full: html, text
    a3b71dd1f4305f4ccec1c532565ec7e0fc0e4127 Sun Mar 9 01:11:17 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 1, context: html, text, full: html, text
    a3b71dd1f4305f4ccec1c532565ec7e0fc0e4127 Sun Mar 9 01:11:17 2025 -0800
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 1, context: html, text, full: html, text
    a3b71dd1f4305f4ccec1c532565ec7e0fc0e4127 Sun Mar 9 01:11:17 2025 -0800
    Installing updated hg.conf files from UCSC servers
• src/blat/makefile
  • lines changed 12, context: html, text, full: html, text
    74713bf989016a59eea9825daf922cf8ac377720 Wed Mar 5 14:06:53 2025 -0800
    fixed userApp in docker make problem caused by blatHuge and gfServerHuge rules
• src/gfServer/makefile
  • lines changed 14, context: html, text, full: html, text
    74713bf989016a59eea9825daf922cf8ac377720 Wed Mar 5 14:06:53 2025 -0800
    fixed userApp in docker make problem caused by blatHuge and gfServerHuge rules
• src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c
  • lines changed 8, context: html, text, full: html, text
    96d7a1cc2f69c3989b4ca7cc2e94ef2b8df310dd Tue Mar 4 11:18:54 2025 -0800
    Adding tiff and avi to cdwSubmit.c and cdwMakeValidFile.c for ingest
  • lines changed 1, context: html, text, full: html, text
    e8e9f56ae9f3a3de5b078575668bfa3a549d40a5 Thu Mar 6 14:08:14 2025 -0800
    Changing tiff to tif to match file of lab naming
  • lines changed 10, context: html, text, full: html, text
    45572bc7dd345b201bb883da8448f6deb6029d25 Fri Mar 7 13:03:54 2025 -0800
    Adding h5ad and rds to cdwMakeValidFile
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
  • lines changed 1, context: html, text, full: html, text
    96d7a1cc2f69c3989b4ca7cc2e94ef2b8df310dd Tue Mar 4 11:18:54 2025 -0800
    Adding tiff and avi to cdwSubmit.c and cdwMakeValidFile.c for ingest
  • lines changed 1, context: html, text, full: html, text
    e8e9f56ae9f3a3de5b078575668bfa3a549d40a5 Thu Mar 6 14:08:14 2025 -0800
    Changing tiff to tif to match file of lab naming
  • lines changed 5, context: html, text, full: html, text
    5a3d713e379d8f22ee6e7ddb86a9c698d7a2da3f Thu Mar 6 16:21:18 2025 -0800
    Adding in Jim’s cdwSubmit backup code vs previous CIRM code
  • lines changed 1, context: html, text, full: html, text
    7d198e9a3d400500ecd285fc87062a2027a6b84a Fri Mar 7 13:05:11 2025 -0800
    Adding h5ad and rds to cdwSubmit
• src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
  • lines changed 4, context: html, text, full: html, text
    40c8afb3637f33d6717a5e9e50df2ce4de64eb04 Fri Mar 7 12:28:22 2025 -0800
    Correcting reference to Henry Gannt
  • lines changed 41, context: html, text, full: html, text
    2d2fec4fac516db6c64f0ae9580a44bffabb7687 Fri Mar 7 15:16:03 2025 -0800
    Adding ADGC5 Scripps to Henry Gantt SSPsyGene Timelines Chart
  • lines changed 8, context: html, text, full: html, text
    15ed63ceea10b8d6fe49feb3b9e4bb51716b22b9 Sat Mar 8 09:53:13 2025 -0800
    Ammending Scripps to Scripps/Broad per Catharina request in email
• src/hg/hgConvert/hgConvert.c
  • lines changed 2, context: html, text, full: html, text
    a5b4143cce3c9d49ab4c0e0175b7f36320583d94 Mon Mar 10 08:35:22 2025 -0700
    ongoing work on quickLift
• src/hg/hgHubConnect/trackHubWizard.c
  • lines changed 6, context: html, text, full: html, text
    bbe2055111b0bababdc240a64233b994f6b5de91 Tue Mar 4 11:13:56 2025 -0800
    Bump up DataTables javascript library versions to fix layout bug when initializing a table but not displaying it yet, like we do in the hub upload tab on hgHubConnect, refs #31058
• src/hg/hgLiftOver/hgLiftOver.c
  • lines changed 7, context: html, text, full: html, text
    569762e235486d02f69f6e677789e774f0f057a2 Fri Mar 7 14:14:40 2025 -0800
    adding view conversions link to hgLiftOver results section, refs #20666
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 2, context: html, text, full: html, text
    0ccef37cf87b5f08c05959db43e48c8d91fba4db Thu Mar 6 12:37:07 2025 -0800
    Adding docker page links to help pages, refs #34915
• src/hg/htdocs/goldenPath/help/hgGenomeHelp.html
  • lines changed 10, context: html, text, full: html, text
    409c64a1121ee70c37a7e5178cf42320d683fdc2 Fri Feb 28 14:47:15 2025 -0800
    Updating example due to a bug with the '+', refs #17555
• src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
  • lines changed 73, context: html, text, full: html, text
    a4305926f0e89a8af454e34709174f7ea07fb5bb Thu Mar 6 00:41:37 2025 -0800
    Add support for DropBox for hubs and customtracks using byteranges. fixes #35342
• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 9, context: html, text, full: html, text
    0ccef37cf87b5f08c05959db43e48c8d91fba4db Thu Mar 6 12:37:07 2025 -0800
    Adding docker page links to help pages, refs #34915
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 5, context: html, text, full: html, text
    b36887bf67b6569905ba548d189e1fb3e9cb22cc Thu Mar 6 08:19:11 2025 -0800
    Added hic to the list of bigDataUrl filetypes and linked from the hic trackDb description to the hic help page, refs #35343
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 2, context: html, text, full: html, text
    303949077cb654793c881777c930c537efd7b121 Mon Mar 3 11:07:40 2025 -0800
    Removing the 'vertical' word from the announcement since these are horizontal highlights. Changing 'they' to 'items' to clarify the sentence, refs #34703
  • lines changed 4, context: html, text, full: html, text
    eeb175f7075cf1fca96313b4892668d632157f82 Mon Mar 3 15:29:51 2025 -0800
    Fixing grammar for highlight announcement, refs #34703
  • lines changed 38, context: html, text, full: html, text
    c0e990a37bac39f6d5c8d22512d6232d299050fd Wed Mar 5 10:39:28 2025 -0800
    Announcing the release of the Splicing Impact super track and the SpliceVarDB track, refs #34823
  • lines changed 1, context: html, text, full: html, text
    21396a5cf38d93981f29215f391ffe421ef0cdb1 Wed Mar 5 11:54:03 2025 -0800
    Updating the SpliceVarDB track URL in the newsarch.html, refs #34823
  • lines changed 1, context: html, text, full: html, text
    f343a2eec7aae9bece61cd01e241c2f6ffcc4c5f Wed Mar 5 13:41:02 2025 -0800
    Fixing a typo found by code review, refs #35321
  • lines changed 44, context: html, text, full: html, text
    998f09b6da06e82ac416122c08aa2ec32694b409 Thu Mar 6 14:27:46 2025 -0800
    Announcing the release of the MITOMAP track, refs #24849
  • lines changed 6, context: html, text, full: html, text
    bb787f680e151b54e5f3580272d295d7c1b549b3 Thu Mar 6 15:02:12 2025 -0800
    Updating the MITOMAP newsarch.html, refs #24849
• src/hg/htdocs/images/newsArchImages/SpliceVarDB.jpg
  • lines changed 0, context: html, text, full: html, text
    9308f97c7196e75b52869594a794198865947c1f Wed Mar 5 11:12:24 2025 -0800
    Adding image for the Splicing Impact and SpliceVarDB track announcement, refs #34823
• src/hg/htdocs/images/newsArchImages/mitoMap_MT_TL1.jpg
  • lines changed 0, context: html, text, full: html, text
    998f09b6da06e82ac416122c08aa2ec32694b409 Thu Mar 6 14:27:46 2025 -0800
    Announcing the release of the MITOMAP track, refs #24849
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    c0e990a37bac39f6d5c8d22512d6232d299050fd Wed Mar 5 10:39:28 2025 -0800
    Announcing the release of the Splicing Impact super track and the SpliceVarDB track, refs #34823
  • lines changed 12, context: html, text, full: html, text
    998f09b6da06e82ac416122c08aa2ec32694b409 Thu Mar 6 14:27:46 2025 -0800
    Announcing the release of the MITOMAP track, refs #24849
• src/hg/htdocs/training/index.html
  • lines changed 3, context: html, text, full: html, text
    0ccef37cf87b5f08c05959db43e48c8d91fba4db Thu Mar 6 12:37:07 2025 -0800
    Adding docker page links to help pages, refs #34915
• src/hg/hubApi/getData.c
  • lines changed 7, context: html, text, full: html, text
    69d620fa14cf647c4f2dc45f82aedba7f51c27cd Mon Mar 3 15:06:42 2025 -0800
    Allow hub tracks in hubApi /getData/track function, refs #34627
• src/hg/hubApi/hubApi.c
  • lines changed 13, context: html, text, full: html, text
    42f9d011018e9b34cd8296ed8ebfb951465549c2 Mon Mar 3 15:49:39 2025 -0800
    Fix undecoration of genome names bug, no need to undecorate genome names when doing download data in window request, make hubApi catch if the genome= argument is an assembly hub and act correctly, refs #34627
• src/hg/js/hgTracks.js
  • lines changed 6, context: html, text, full: html, text
    3a59bf47db3bd7a30bbc717c74c341055380c477 Mon Mar 3 15:17:47 2025 -0800
    Make track hubs on native databases (and hs1) work in download all data in window feature on hgTracks, refs #34627
  • lines changed 1, context: html, text, full: html, text
    42f9d011018e9b34cd8296ed8ebfb951465549c2 Mon Mar 3 15:49:39 2025 -0800
    Fix undecoration of genome names bug, no need to undecorate genome names when doing download data in window request, make hubApi catch if the genome= argument is an assembly hub and act correctly, refs #34627
  • lines changed 14, context: html, text, full: html, text
    eb1bae3e9dfdebcb95f621724dc5c08e7904e555 Wed Mar 5 10:05:48 2025 -0800
    Explicitly add the db= parameter to calls to navigateInPlace() to prevent weird to the user bugs when multiple tabs are open. This is just a quick fix to prevent unwanted behavior while we figure out the multiple tabs = can still be one hgsid problem, refs #35199
• src/hg/js/utils.js
  • lines changed 1, context: html, text, full: html, text
    42f9d011018e9b34cd8296ed8ebfb951465549c2 Mon Mar 3 15:49:39 2025 -0800
    Fix undecoration of genome names bug, no need to undecorate genome names when doing download data in window request, make hubApi catch if the genome= argument is an assembly hub and act correctly, refs #34627
  • lines changed 20, context: html, text, full: html, text
    569762e235486d02f69f6e677789e774f0f057a2 Fri Mar 7 14:14:40 2025 -0800
    adding view conversions link to hgLiftOver results section, refs #20666
• src/hg/lib/heatmap.as
  • lines changed 2, context: html, text, full: html, text
    707625ec62a7a46896695c75264d582227970c76 Tue Mar 4 08:19:20 2025 -0800
    Putting a more unique name on the heatmap.as file, refs #31812
• src/hg/lib/trackHub.c
  • lines changed 113, context: html, text, full: html, text
    37f3d8e76d96d4d7530dabe536cf659109867a64 Sat Mar 8 09:50:51 2025 -0800
    ongoing work on quickLift. Output the entire composite if a track within is visible
  • lines changed 5, context: html, text, full: html, text
    a5b4143cce3c9d49ab4c0e0175b7f36320583d94 Mon Mar 10 08:35:22 2025 -0700
    ongoing work on quickLift
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 3, context: html, text, full: html, text
    9db233549227d140513eb98a11f170865218bf9b Mon Mar 3 23:08:01 2025 -0800
    adding 3 per user request refs #29545
  • lines changed 12, context: html, text, full: html, text
    f44053f200533c80ccdb790cd5943f3cbf105bd6 Wed Mar 5 08:10:24 2025 -0800
    adding one per user request and VGP update refs #29545
  • lines changed 2, context: html, text, full: html, text
    514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
    one per user update and VGP update refs #29545
  • lines changed 45, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    f44053f200533c80ccdb790cd5943f3cbf105bd6 Wed Mar 5 08:10:24 2025 -0800
    adding one per user request and VGP update refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
    VGP update refs #29545
  • lines changed 2, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
    VGP update refs #29545
  • lines changed 5, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
    one per user update and VGP update refs #29545
  • lines changed 18, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 7, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
    VGP update refs #29545
  • lines changed 1, context: html, text, full: html, text
    514c98eac288e3dbfd53077dcc9f89d3c384a39b Thu Mar 6 20:41:54 2025 -0800
    one per user update and VGP update refs #29545
  • lines changed 15, context: html, text, full: html, text
    66e03f33064b0c5b0b50bee546ca311348451595 Mon Mar 10 12:39:17 2025 -0700
    RefSeq update refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    9db233549227d140513eb98a11f170865218bf9b Mon Mar 3 23:08:01 2025 -0800
    adding 3 per user request refs #29545
  • lines changed 2, context: html, text, full: html, text
    854198919ae15fe9def894aa69d988477e9da3ba Wed Mar 5 08:19:22 2025 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
  • lines changed 7, context: html, text, full: html, text
    589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
    VGP update refs #34370
  • lines changed 5, context: html, text, full: html, text
    1412b159bb0149d6c9a2298e9ba925f15a4b0c09 Wed Mar 5 12:26:49 2025 -0800
    VGP update almost up to date refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
    VGP update refs #34370
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 15, context: html, text, full: html, text
    589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
    VGP update refs #34370
  • lines changed 8, context: html, text, full: html, text
    1412b159bb0149d6c9a2298e9ba925f15a4b0c09 Wed Mar 5 12:26:49 2025 -0800
    VGP update almost up to date refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 16, context: html, text, full: html, text
    589a76d22ae4ba72f908f7854d15b61c53239120 Tue Mar 4 14:47:43 2025 -0800
    VGP update refs #34370
• src/hg/makeDb/hgGoldGapGl/makefile
  • lines changed 1, context: html, text, full: html, text
    daa6cc4137943ddef05b21574bb184929deac224 Thu Mar 6 22:23:31 2025 -0800
    Two more broken makefiles to fix, refs #35340
• src/hg/makeDb/hgLoadMaf/makefile
  • lines changed 1, context: html, text, full: html, text
    daa6cc4137943ddef05b21574bb184929deac224 Thu Mar 6 22:23:31 2025 -0800
    Two more broken makefiles to fix, refs #35340
• src/hg/makeDb/hgLoadWiggle/makefile
  • lines changed 1, context: html, text, full: html, text
    0badbe735b5b1ede771d0e034536394cab315b6a Wed Mar 5 17:18:59 2025 -0800
    Fixing typo in compile target, no ticket
• src/hg/makeDb/trackDb/human/abSplice.alpha.ra
  • lines changed 17, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/abSplice.ra
  • lines changed 2, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/civic.html
  • lines changed 1, context: html, text, full: html, text
    f343a2eec7aae9bece61cd01e241c2f6ffcc4c5f Wed Mar 5 13:41:02 2025 -0800
    Fixing a typo found by code review, refs #35321
• src/hg/makeDb/trackDb/human/mitoMap.html
  • lines changed 117, context: html, text, full: html, text
    9ecc6203f2b73b1ca98cb711b5e770577385b21a Wed Feb 26 16:36:31 2025 -0800
    Updating the mitoMap description page, refs #24849
  • lines changed 7, context: html, text, full: html, text
    77d8e74cbe26eadaf46c1ca3230f4d0bc59977cc Mon Mar 3 14:18:27 2025 -0800
    Adding chromosomes chrM,chrMT trackDb setting and note about MITOMAP data is available for chrM on hg38 and chrMT on hg19, refs #24849
• src/hg/makeDb/trackDb/human/mitoMap.ra
  • lines changed 1, context: html, text, full: html, text
    77d8e74cbe26eadaf46c1ca3230f4d0bc59977cc Mon Mar 3 14:18:27 2025 -0800
    Adding chromosomes chrM,chrMT trackDb setting and note about MITOMAP data is available for chrM on hg38 and chrMT on hg19, refs #24849
  • lines changed 1, context: html, text, full: html, text
    998f09b6da06e82ac416122c08aa2ec32694b409 Thu Mar 6 14:27:46 2025 -0800
    Announcing the release of the MITOMAP track, refs #24849
• src/hg/makeDb/trackDb/human/spliceAI.alpha.ra
  • lines changed 78, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/spliceAI.ra
  • lines changed 8, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/spliceImpactSuper.alpha.ra
  • lines changed 1, context: html, text, full: html, text
    c0e990a37bac39f6d5c8d22512d6232d299050fd Wed Mar 5 10:39:28 2025 -0800
    Announcing the release of the Splicing Impact super track and the SpliceVarDB track, refs #34823
  • lines changed 13, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/spliceImpactSuper.html
  • lines changed 189, context: html, text, full: html, text
    e581e5a00da4cf4433b462a1f48f68a411861a08 Tue Mar 4 15:31:58 2025 -0800
    Adding AbSplice and SpliceAI details to the spliceImpactSuper description page, refs #34823
• src/hg/makeDb/trackDb/human/spliceImpactSuper.ra
  • lines changed 9, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/makeDb/trackDb/human/splicevardb.ra
  • lines changed 1, context: html, text, full: html, text
    c0e990a37bac39f6d5c8d22512d6232d299050fd Wed Mar 5 10:39:28 2025 -0800
    Announcing the release of the Splicing Impact super track and the SpliceVarDB track, refs #34823
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    df6ae7b334482fa02fe68be519f180d9498992e1 Wed Mar 5 11:23:32 2025 -0800
    Removing release tags for the Splicing Impact super track, refs #34823
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 3, context: html, text, full: html, text
    cd52f66464cce415303d7ae24ba28603c927ee4f Thu Mar 6 15:39:33 2025 -0800
    better names in ncbiRefSeq track fields and updated related trackDb URLs refs #32704
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 12, context: html, text, full: html, text
    cd52f66464cce415303d7ae24ba28603c927ee4f Thu Mar 6 15:39:33 2025 -0800
    better names in ncbiRefSeq track fields and updated related trackDb URLs refs #32704
• src/hg/utils/automation/updateName2.pl
  • lines changed 131, context: html, text, full: html, text
    e7dfb28b932077142b9e5db6f43a21ddbd32e7fa Thu Mar 6 09:36:52 2025 -0800
    function to update column 18 of bigGenePred to be GeneID for link to NCBI refs #34704
  • lines changed 5, context: html, text, full: html, text
    b4924336d330068ac4c39222f6cd730d33f486a1 Thu Mar 6 15:35:53 2025 -0800
    can also fixup geneName2 when transition takes place refs #32704
• src/hg/utils/hubCheck/hubCheck.c
  • lines changed 11, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/expected/badGroups.output.txt
  • lines changed 3, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/expected/goodGroups.output.txt
  • lines changed 2, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/expected/noCompositeGroup.output.txt
  • lines changed 2, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/input/badGroups.txt
  • lines changed 45, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/input/goodGroups.txt
  • lines changed 45, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/input/groupSpec.txt
  • lines changed 4, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/input/noCompositeGroup.txt
  • lines changed 42, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/hg/utils/hubCheck/tests/makefile
  • lines changed 13, context: html, text, full: html, text
    390ac49268af6881834e0b5eda1f7186814126cc Thu Mar 6 10:31:39 2025 -0800
    Check that subtracks have the same group setting as their parent track, refs #35078
• src/lib/htmshell.c
  • lines changed 3, context: html, text, full: html, text
    bbe2055111b0bababdc240a64233b994f6b5de91 Tue Mar 4 11:13:56 2025 -0800
    Bump up DataTables javascript library versions to fix layout bug when initializing a table but not displaying it yet, like we do in the hub upload tab on hgHubConnect, refs #31058
• src/lib/net.c
  • lines changed 14, context: html, text, full: html, text
    a4305926f0e89a8af454e34709174f7ea07fb5bb Thu Mar 6 00:41:37 2025 -0800
    Add support for DropBox for hubs and customtracks using byteranges. fixes #35342
• src/lib/udc.c
  • lines changed 7, context: html, text, full: html, text
    a4305926f0e89a8af454e34709174f7ea07fb5bb Thu Mar 6 00:41:37 2025 -0800
    Add support for DropBox for hubs and customtracks using byteranges. fixes #35342
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    0e11f94fc220f1bcddbaed4042ca64d1a98f9497 Mon Mar 10 13:00:38 2025 -0700
    v479 preview2, refs #35332
• src/utils/qa/weeklybld/makeUserApps.csh
  • lines changed 2, context: html, text, full: html, text
    2c1354901ae31f679ad155e4ba80481ca1f5084c Wed Mar 5 16:57:12 2025 -0800
    Making sure blatHuge and gfServerHuge go to the right place on our download servers, no ticket
• src/utils/qa/weeklybld/userApps.sh
  • lines changed 4, context: html, text, full: html, text
    f5b2aba0e48330fe14fd3490cb73e1663369ccab Thu Mar 6 22:35:20 2025 -0800
    hgdownload2 has been back for a bit; restoring userApps.src.tgz pushes, no ticket
• src/utils/tabFmt/tabFmt.c
  • lines changed 4, context: html, text, full: html, text
    6ce8e2a49e047984065d64c16b34219c8587d2ad Fri Mar 7 13:37:21 2025 -0800
    change tabFmt to require input file and generate help message if no arguments are given

• lines changed: 1514
• files changed: 106