File Changes for hiram

v484_preview to v484_preview2 (2025-06-16 to 2025-06-23) v484

• src/hg/makeDb/dbDbToHubTxt/dbDbToHubTxt.c
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    44d026f9ecece467941e2de29d3050689a8492f4 Wed Jun 18 14:19:46 2025 -0700
    correct spelling of descriptionUrl refs #35898
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    b8607bcc9e37304401155e66e3a87f8b6edc8035 Thu Jun 19 09:06:41 2025 -0700
    adding one per user request refs #29545
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    c9df6cd81ece4a167f3de03888abe3522f851abf Thu Jun 19 15:29:02 2025 -0700
    adding updated HPRC assemblies refs #35415
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
  • lines changed 2, context: html, text, full: html, text
    359adb77c8cc1ebc8f1d8013b4d138d1311b2775 Thu Jun 19 11:17:12 2025 -0700
    correct email address in the hub.txt files
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
  • lines changed 1, context: html, text, full: html, text
    b8607bcc9e37304401155e66e3a87f8b6edc8035 Thu Jun 19 09:06:41 2025 -0700
    adding one per user request refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    b8607bcc9e37304401155e66e3a87f8b6edc8035 Thu Jun 19 09:06:41 2025 -0700
    adding one per user request refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    b8607bcc9e37304401155e66e3a87f8b6edc8035 Thu Jun 19 09:06:41 2025 -0700
    adding one per user request refs #29545
  • lines changed 101, context: html, text, full: html, text
    c9df6cd81ece4a167f3de03888abe3522f851abf Thu Jun 19 15:29:02 2025 -0700
    adding updated HPRC assemblies refs #35415
• src/hg/makeDb/trackDb/chicken/galGal7b/genArk.trackDb.ra
  • lines changed 896, context: html, text, full: html, text
    083d201617a2e46b63f16cb8ee7d977fb5a7f0be Wed Jun 18 15:00:42 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/makeDb/trackDb/chicken/galGal7b/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    083d201617a2e46b63f16cb8ee7d977fb5a7f0be Wed Jun 18 15:00:42 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/makeDb/trackDb/chicken/galGal7w/genArk.trackDb.ra
  • lines changed 389, context: html, text, full: html, text
    083d201617a2e46b63f16cb8ee7d977fb5a7f0be Wed Jun 18 15:00:42 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/makeDb/trackDb/chicken/galGal7w/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    083d201617a2e46b63f16cb8ee7d977fb5a7f0be Wed Jun 18 15:00:42 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/makeDb/trackDb/hubTxtFromGenArk.pl
  • lines changed 146, context: html, text, full: html, text
    05d27bee6baaa2a68c516dc3b2ae31841479c8e8 Wed Jun 18 13:01:40 2025 -0700
    helper script to get a hub.txt and trackDb.txt out of an existing GenArk hub refs #35898
• src/hg/makeDb/trackDb/maybeBuildHub
  • lines changed 79, context: html, text, full: html, text
    0d7e402cab1ae33138f397deebe5396064a3b43a Wed Jun 18 14:28:34 2025 -0700
    now making hub.txt directly out of the GenArk hub.txt refs #35898
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    386ada600e1f420cacee4b504ede27c63590f098 Thu Jun 19 13:20:14 2025 -0700
    mpxvRivers should be like hs1
• src/hg/makeDb/trackDb/rat/rn8/genArk.trackDb.ra
  • lines changed 594, context: html, text, full: html, text
    96b2dc6c40d4b9b6790fc71a5e217e275695e01f Wed Jun 18 13:58:59 2025 -0700
    initial trackDb from the GenArk hub refs #35898
• src/hg/makeDb/trackDb/zebrafish/danRer12/genArk.trackDb.ra
  • lines changed 249, context: html, text, full: html, text
    fa8c5189bd70f63e4e4570a6abca89ce453f4cc7 Wed Jun 18 15:01:06 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/makeDb/trackDb/zebrafish/danRer12/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    fa8c5189bd70f63e4e4570a6abca89ce453f4cc7 Wed Jun 18 15:01:06 2025 -0700
    initial trackDb from GenArk refs #35898
• src/hg/utils/otto/genArk/pushRR/README.txt
  • lines changed 10, context: html, text, full: html, text
    e8f57e6eaf7d6f0c26290eb27b2c4ee7ca139299 Thu Jun 19 15:14:38 2025 -0700
    moving this cron job from hiram account to otto account refs #34706
  • lines changed 9, context: html, text, full: html, text
    f9a440c2466f991820f1e738522ffb83ad721d60 Fri Jun 20 11:49:03 2025 -0700
    add the Asia node pullHgwdev.sh script refs #34706
• src/hg/utils/otto/genArk/pushRR/alphaBetaPush.pl
  • lines changed 190, context: html, text, full: html, text
    e8f57e6eaf7d6f0c26290eb27b2c4ee7ca139299 Thu Jun 19 15:14:38 2025 -0700
    moving this cron job from hiram account to otto account refs #34706
• src/hg/utils/otto/genArk/pushRR/pullHgwdev.sh
  • lines changed 25, context: html, text, full: html, text
    f9a440c2466f991820f1e738522ffb83ad721d60 Fri Jun 20 11:49:03 2025 -0700
    add the Asia node pullHgwdev.sh script refs #34706
• src/hg/utils/otto/genArk/pushRR/pushRR.sh
  • lines changed 35, context: html, text, full: html, text
    e8f57e6eaf7d6f0c26290eb27b2c4ee7ca139299 Thu Jun 19 15:14:38 2025 -0700
    moving this cron job from hiram account to otto account refs #34706
• src/hg/utils/otto/otto.crontab
  • lines changed 6, context: html, text, full: html, text
    a8eae8da85b2206130a2510243b814c78ac76df3 Fri Jun 20 11:53:59 2025 -0700
    add the pushRR.sh GenArk script, used to be in Hiram\'s crontab refs #34706