Commits for markd

v245_preview2 to v245_base (2010-12-21 to 2011-01-04) v245

• removed comment that is no longer true
  • src/hg/lib/hgRelate.c - lines changed 4, context: html, text, full: html, text
• moved to programs to hg/utils, fixed build of distributed utilities
  • src/hg/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/overlapSelect/chromAnn.c - lines changed 561, context: html, text, full: html, text
  • src/hg/overlapSelect/chromAnn.h - lines changed 115, context: html, text, full: html, text
  • src/hg/overlapSelect/chromAnnMap.c - lines changed 105, context: html, text, full: html, text
  • src/hg/overlapSelect/chromAnnMap.h - lines changed 40, context: html, text, full: html, text
  • src/hg/overlapSelect/coordCols.c - lines changed 86, context: html, text, full: html, text
  • src/hg/overlapSelect/coordCols.h - lines changed 47, context: html, text, full: html, text
  • src/hg/overlapSelect/makefile - lines changed 36, context: html, text, full: html, text
  • src/hg/overlapSelect/overlapSelect.c - lines changed 482, context: html, text, full: html, text
  • src/hg/overlapSelect/rowReader.c - lines changed 92, context: html, text, full: html, text
  • src/hg/overlapSelect/rowReader.h - lines changed 31, context: html, text, full: html, text
  • src/hg/overlapSelect/selectTable.c - lines changed 329, context: html, text, full: html, text
  • src/hg/overlapSelect/selectTable.h - lines changed 71, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_nonover_NM_015110bed.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_nonover_NM_015110bed_split.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_nonover_NM_015110gp.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_nonover_NM_015110gp.drop.bed - lines changed 6, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110bedIdOutput.ids - lines changed 7, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110bedMerge.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110bedStatsOutput.stats - lines changed 7, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110bedStatsOutputAll.stats - lines changed 16, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110bed_split.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110gp.bed - lines changed 6, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_NM_015110gp.drop.bed - lines changed 9, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_over_bedStatsOutputBoth.stats - lines changed 18, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_threshold_ceil_only.bed - lines changed 1, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/bed_threshold_ceil_only_no.bed - lines changed 0, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/cdsOverlapCdsCds.gp - lines changed 0, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/cds_id_out_gp.ids - lines changed 13, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/chain_nonover_NM_001206bed.chain - lines changed 165, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/chain_over_NM_015110gp.chain - lines changed 127, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/colExclude.cluster - lines changed 6, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/colSelectMerge.cluster - lines changed 4, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/colSelectStrand.cluster - lines changed 3, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/colStats.cluster - lines changed 5, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/exludeself_nonover_mrna1.psl - lines changed 2, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/exludeself_nonover_mrna2.psl - lines changed 1, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/exludeself_over_mrna2.psl - lines changed 3, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/gp_gp_aggregate100.ids - lines changed 4, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_aggregateStats.stats - lines changed 5, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/gp_gp_similarity100.ids - lines changed 4, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_similarityCds100.ids - lines changed 3, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_similarityCds75.ids - lines changed 4, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_threshold100.ids - lines changed 4, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_threshold75.ids - lines changed 5, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/gp_gp_thresholdCds95Rev.ids - lines changed 3, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/gp_psl_prot80.psl - lines changed 2, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/gp_psl_protStats.stats - lines changed 9, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/idMatchSimple.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/idMatchSimpleNon.gp - lines changed 0, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/name2EmptyTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/noCdsSelect.gp - lines changed 0, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/noCdsSelectNoOver.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/orthoStrandTest.stats - lines changed 2, context: html, text, full: html, text
  • src/hg/overlapSelect/tests/expected/overlapBases2100.bed - lines changed 5, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/psl_gp_non_aggregate.drop.psl - lines changed 5, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/psl_gp_non_similarity.drop.psl - lines changed 5, context: html, text, full: html, text
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  • src/hg/overlapSelect/tests/expected/psl_gp_prot80.gp - lines changed 2, context: html, text, full: html, text
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