File Changes for angie

v246_preview to v246_preview2 (2011-01-11 to 2011-01-18) v246

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 24, context: html, text, full: html, text
    Made several portions of the SNP controls page collapsible.
• src/hg/hgTracks/cds.c
  • lines changed 4, context: html, text, full: html, text
    Added some #ifdef USE_BAM's to fix compile on systems that don't have samtools/USE_BAM.
• src/hg/hgTracks/cds.h
  • lines changed 4, context: html, text, full: html, text
    Added some #ifdef USE_BAM's to fix compile on systems that don't have samtools/USE_BAM.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): registered track handlers for new subset tracks snp132Common, snp132Patient, snp132NonUnique.
• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    Small bugfix and format tweak for SNP details when there are multiplemappings to the genome.
  • lines changed 36, context: html, text, full: html, text
    Moved hgc.c's {begin,end}CollapsibleSection to jsHelper.c:js{Begin,End}CollapsibleSection so I can use in hgTrackUi.
  • lines changed 4, context: html, text, full: html, text
    Some more polishing for SNP details.
  • lines changed 5, context: html, text, full: html, text
    Just for fun, added HGDP world map icon to collapsible section header in SNP details.
• src/hg/hgc/hgc.h
  • lines changed 4, context: html, text, full: html, text
    Oops, thought this was included in 31b56093: Just for fun, added HGDP world map icon to collapsible section header in SNP details.
• src/hg/hgc/hgdpClick.c
  • lines changed 26, context: html, text, full: html, text
    Just for fun, added HGDP world map icon to collapsible section header in SNP details.
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    CSS tweak: added class=bigBlue to TD in beginCollapsibleSection
• src/hg/inc/jsHelper.h
  • lines changed 8, context: html, text, full: html, text
    Moved hgc.c's {begin,end}CollapsibleSection to jsHelper.c:js{Begin,End}CollapsibleSection so I can use in hgTrackUi.
• src/hg/lib/hgFind.c
  • lines changed 1, context: html, text, full: html, text
    Small fix: pass a proper format string to truncatef because the string to be copied can contain '%'.
• src/hg/lib/jsHelper.c
  • lines changed 31, context: html, text, full: html, text
    Moved hgc.c's {begin,end}CollapsibleSection to jsHelper.c:js{Begin,End}CollapsibleSection so I can use in hgTrackUi.
  • lines changed 1, context: html, text, full: html, text
    Added width to <TD> tag in jsBeginCollapsible section. This stabilizes the width in FireFox but unfortunately not IE.
  • lines changed 1, context: html, text, full: html, text
    CSS tweak: added class=bigBlue to TD in beginCollapsibleSection
• src/hg/makeDb/doc/hg19.txt
  • lines changed 76, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added subsets of snp132: Common, Patient, Non-Unique ("Failed" for now as Paul Flicek described them)
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 38, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added subsets of snp132: Common, Patient, Non-Unique ("Failed" for now as Paul Flicek described them)
  • lines changed 25, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Added search specs for new subset tracks snp132Common, snp132Patient and snp132NonUnique.
• src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
  • lines changed 3, context: html, text, full: html, text
    Use return value from system() to avoid warning/error about ignoring it from gcc 4.4.1-4ubuntu9.