All File Changes

v269_preview2 to v269_base (2012-06-19 to 2012-06-26) v269

• src/ameme/ameme.c
  • lines changed 8, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/ameme/fixpAmeme.c
  • lines changed 10, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/blat/version.doc
  • lines changed 1, context: html, text, full: html, text
    fixing out=sim4 to filter on minIdentity, and to reverse the output order of alignments
• src/getgene/getgene.c
  • lines changed 4, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/altSplice/affySplice/altProbes.c
  • lines changed 17, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/cartDump/cartDump.c
  • lines changed 0, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in file format as gtg instead of gtf.
• src/hg/encode/cellTypeParser/cellTypeParser.py
  • lines changed 1, context: html, text, full: html, text
    corrected cellTypeParser to use the correct table index in updated wiki
• src/hg/encode/encodeMkFilesList/encodeMkFilesList
  • lines changed 3, context: html, text, full: html, text
    bams behave oddly sometimes
• src/hg/encode/getTrackReferences/getTrackReferences
  • lines changed 1, context: html, text, full: html, text
    forgot a period
  • lines changed 2, context: html, text, full: html, text
    fixed the name in the usage
  • lines changed 2, context: html, text, full: html, text
    removeing auto help
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 44, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
  • lines changed 1, context: html, text, full: html, text
    Oops... added a bad close paren
• src/hg/encode/lib/encodePatchTdb.c
  • lines changed 9, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/encode/validateCv/validateCv.c
  • lines changed 0, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 4, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/geneBounds/orf/orf.c
  • lines changed 6, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gigAssembler/ooGreedy/getgene/getgene.c
  • lines changed 4, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gisaid/gisaidSample/gisaidSample.c
  • lines changed 12, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gisaid/gisaidSubj/gisaidSubj.c
  • lines changed 12, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gisaid/gisaidTable/gisaidTable.c
  • lines changed 17, context: html, text, full: html, text
    Fourth (missed one from 1st) of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gsid/gsidSubj/gsidSubj.c
  • lines changed 10, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gsid/gsidSubj3/gsidSubj3.c
  • lines changed 10, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/gsid/gsidTable/gsidTable.c
  • lines changed 42, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgApi/hgApi.c
  • lines changed 17, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgCoordConv/hgCoordConv.c
  • lines changed 10, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgCustom/hgCustom.c
  • lines changed 8, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgFileSearch/hgFileSearch.c
  • lines changed 54, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgFileUi/hgFileUi.c
  • lines changed 14, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgGateway/hgGateway.c
  • lines changed 29, context: html, text, full: html, text
    refactor code into defaultNode function
  • lines changed 28, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgGene/altSplice.c
  • lines changed 0, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgGene/hgGeneData/links.ra
  • lines changed 8, context: html, text, full: html, text
    enforce read-only wikiTrack
• src/hg/hgGene/wikiTrack.c
  • lines changed 7, context: html, text, full: html, text
    enforce read-only wikiTrack
  • lines changed 5, context: html, text, full: html, text
    make the wiki track read only be an option in hg.conf
• src/hg/hgGeneRing/hgGeneRing.c
  • lines changed 44, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgLogin/hgLogin.c
  • lines changed 5, context: html, text, full: html, text
    Bug #8294 Check generated new password is correct before let the user login and change password.
  • lines changed 82, context: html, text, full: html, text
    Bug #8250 Replace hard coded 'UCSC Genome Browser', signature and return address in GUI and mail text with value from hg.conf.
• src/hg/hgLogin/hgLogin.h
  • lines changed 4, context: html, text, full: html, text
    Bug #8250 Replace hard coded 'UCSC Genome Browser', signature and return address in GUI and mail text with value from hg.conf.
• src/hg/hgTables/filterFields.c
  • lines changed 2, context: html, text, full: html, text
    add filtering fields for bigWig custom tracks (#7013)
• src/hg/hgTables/mainPage.c
  • lines changed 1, context: html, text, full: html, text
    Fixed broken OH link.
• src/hg/hgText/hgText.c
  • lines changed 24, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgTracks/hgTracks.c
  • lines changed 2, context: html, text, full: html, text
    adding bottleneck delay to hgTracks
• src/hg/hgTracks/wikiTrack.c
  • lines changed 1, context: html, text, full: html, text
    setting the wiki track to be read only
  • lines changed 2, context: html, text, full: html, text
    make the wiki track read only be an option in hg.conf
• src/hg/hgc/bigBedClick.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgc/encodeClick.c
  • lines changed 4, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgc/expClick.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgc/rnaFoldClick.c
  • lines changed 34, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/hgc/wikiTrack.c
  • lines changed 4, context: html, text, full: html, text
    setting the wiki track to be read only
  • lines changed 6, context: html, text, full: html, text
    make the wiki track read only be an option in hg.conf
• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 5, context: html, text, full: html, text
    Adding GENCODE V12 to downloads, redmine# 8137
• src/hg/htdocs/ENCODE/downloadsMouse.html
  • lines changed 8, context: html, text, full: html, text
    Adding link to mouse downloads file for wgEncodeMapability (Final/Release 1) RM#3649
  • lines changed 4, context: html, text, full: html, text
    Adding links to Stanford Yale RNA Seq Downloads to Mouse ENCODE Downloads page (Release 1) Final RM#829
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 1, context: html, text, full: html, text
    Cap'ed F and added missing #.
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 2, context: html, text, full: html, text
    added canFam3 assembly
  • lines changed 23, context: html, text, full: html, text
    Added 5 new assemblies that were just released, as well as a few missed from earlier releases. Edited a few items for consistency.
• src/hg/htdocs/goldenPath/credits.html
  • lines changed 6, context: html, text, full: html, text
    added canFam3 credits
  • lines changed 1, context: html, text, full: html, text
    corrected a typo
  • lines changed 6, context: html, text, full: html, text
    Added bosTau7 credits.
  • lines changed 69, context: html, text, full: html, text
    Added new painted turtle section. Added galGal4 and rn5 browser credits. Made some other minor corrections (redmine #5932).
  • lines changed 59, context: html, text, full: html, text
    Made some standardization changes
  • lines changed 4, context: html, text, full: html, text
    One more set of changes
• src/hg/inc/chainCart.h
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/encode/encodeExp.h
  • lines changed 2, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/geoMirror.h
  • lines changed 3, context: html, text, full: html, text
    refactor code into defaultNode function
  • lines changed 2, context: html, text, full: html, text
    fix compile error
• src/hg/inc/hgMaf.h
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/metaTbl.h
  • lines changed 307, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/netCart.h
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v269
• src/hg/inc/wiggle.h
  • lines changed 25, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/inc/wikiTrack.h
  • lines changed 4, context: html, text, full: html, text
    make the wiki track read only be an option in hg.conf
• src/hg/lib/chainCart.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/customFactory.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/encode/encodeExp.c
  • lines changed 8, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/geoMirror.c
  • lines changed 31, context: html, text, full: html, text
    refactor code into defaultNode function
  • lines changed 1, context: html, text, full: html, text
    fix compile error
• src/hg/lib/hVarSubst.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/hgFind.c
  • lines changed 1, context: html, text, full: html, text
    double dash becomes ndash
• src/hg/lib/hgMaf.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/jsHelper.c
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/netCart.c
  • lines changed 4, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/trashDir.c
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/wigAsciiToBinary.c
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/wiggleCart.c
  • lines changed 18, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/lib/wikiTrack.c
  • lines changed 5, context: html, text, full: html, text
    setting the wiki track to be read only
  • lines changed 14, context: html, text, full: html, text
    make the wiki track read only be an option in hg.conf
• src/hg/makeDb/doc/bosTau7.txt
  • lines changed 91, context: html, text, full: html, text
    Finished cow bosTau7 vs alpaca vicPac1 LASTZ.
  • lines changed 27, context: html, text, full: html, text
    Finished dog canFam3 vs cow bosTau7 LASTZ.
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 61, context: html, text, full: html, text
    Finished dog canFam3 vs cow bosTau7 LASTZ.
• src/hg/makeDb/doc/echTel1.txt
  • lines changed 122, context: html, text, full: html, text
    done with genbank business
• src/hg/makeDb/doc/encodeDccMm9/wgEncodeCshlLongRnaSeq.release2.notes
  • lines changed 795, context: html, text, full: html, text
    Add notes files for approved last release of track. Redmine #7089.
• src/hg/makeDb/doc/sarHar1.txt
  • lines changed 3, context: html, text, full: html, text
    sarHar1 Initial Release.
• src/hg/makeDb/doc/tarSyr1.txt
  • lines changed 74, context: html, text, full: html, text
    done with genbank business
• src/hg/makeDb/doc/vicPac1.txt
  • lines changed 90, context: html, text, full: html, text
    done with genbank operation
  • lines changed 26, context: html, text, full: html, text
    Finished cow bosTau7 vs alpaca vicPac1 LASTZ.
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added vicPac1.
  • lines changed 1, context: html, text, full: html, text
    Added tarSyr1.
  • lines changed 1, context: html, text, full: html, text
    adding echTel1
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 1, context: html, text, full: html, text
    no need for mrna.xeno on echTel1
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 17, context: html, text, full: html, text
    Turning off genbank updates in preparation for archving 17 assemblies (redmine #8174).
  • lines changed 1, context: html, text, full: html, text
    Adding back panTro3, which has been inexplicably left out of updates on hgwbeta. Pushed tables from hgwdev to hgwbeta first.
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added vicPac1.
  • lines changed 1, context: html, text, full: html, text
    Added tarSyr1.
  • lines changed 1, context: html, text, full: html, text
    adding echTel1
• src/hg/makeDb/genbank/etc/rr.dbs
  • lines changed 17, context: html, text, full: html, text
    Turning off genbank updates in preparation for archving 17 assemblies (redmine #8174).
  • lines changed 1, context: html, text, full: html, text
    added new canFam3 assembly
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 53, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/makeDb/mdbUpdate/mdbUpdate.c
  • lines changed 33, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 11, context: html, text, full: html, text
    adding mouse CRG lab
  • lines changed 22, context: html, text, full: html, text
    correcting crg-m error
  • lines changed 6, context: html, text, full: html, text
    Fixed spelling of molecule name.
  • lines changed 1, context: html, text, full: html, text
    Fixing a typo in CV
  • lines changed 45, context: html, text, full: html, text
    Adding Crawford treatments to CV
  • lines changed 5, context: html, text, full: html, text
    Fixing errors in CV
  • lines changed 1, context: html, text, full: html, text
    Found Type Bug in CV
• src/hg/makeDb/trackDb/cv/beta/cv.ra
  • lines changed 12, context: html, text, full: html, text
    Moved over new mouse lab for Mapability track. Redmine #3649.
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 45, context: html, text, full: html, text
    Moved over approved changes from beta/cv.ra to public/cv.ra. Redmine #8259.
  • lines changed 11, context: html, text, full: html, text
    Moving over new mouse lab for mapability track. Redmine #3649
• src/hg/makeDb/trackDb/human/ctgPos.html
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    Fixed broken links
• src/hg/makeDb/trackDb/human/encodeGencodeGeneMar07.html
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    Fixed broken links
• src/hg/makeDb/trackDb/human/encodeGencodeRaceFrags.html
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    Fixed broken links
• src/hg/makeDb/trackDb/human/geneReviews.html
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    Updated journal citation (redmine #5522)
• src/hg/makeDb/trackDb/human/hg17/encodeUppsalaChip.html
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    Fixed broken links
• src/hg/makeDb/trackDb/human/hg17/encodeUppsalaChipBut.html
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    Fixed broken links
• src/hg/makeDb/trackDb/human/hg17/hapmapSnps.html
  • lines changed 1, context: html, text, full: html, text
    Fixed broken links
• src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChip.html
  • lines changed 17, context: html, text, full: html, text
    Fixed broken links
• src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChipBut.html
  • lines changed 35, context: html, text, full: html, text
    Fixed broken links
• src/hg/makeDb/trackDb/human/hg18/hapmapSnpsPhaseII.html
  • lines changed 1, context: html, text, full: html, text
    Fixed broken links
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCshlShortRnaSeq.ra
  • lines changed 57, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHelicosRnaSeq.ra
  • lines changed 9, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 214, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaRnaSeq.ra
  • lines changed 18, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeMapability.ra
  • lines changed 17, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeSunyalbanyRnaGeneChip.ra
  • lines changed 20, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeYaleRNAseq.ra
  • lines changed 298, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeCshlShortRnaSeq.ra
  • lines changed 57, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHelicosRnaSeq.ra
  • lines changed 9, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 214, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHudsonalphaRnaSeq.ra
  • lines changed 18, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeMapability.ra
  • lines changed 17, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeSunyalbanyRnaGeneChip.ra
  • lines changed 20, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeYaleRNAseq.ra
  • lines changed 298, context: html, text, full: html, text
    cleaning up hg18 metadata - adding expIds, composite obj, removing ripTgtProtein. For HudnsonalphaMethylSeq, also adding labExpId, protocol, removing parentTable, adding dccInternalNotes. Deleting public & beta wgEncodeYaleRNAseq.rafiles because this is not on beta or pub anymore, or even dev actually, also removing the .ra file from the public and beta makefiles.
    
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 48, context: html, text, full: html, text
    Removed some old experimental 1000Genomes tracks after /hive disk cleanup.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 460, context: html, text, full: html, text
    replace spikeins with non compressed versions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 1457, context: html, text, full: html, text
    added in new tracks
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 553, context: html, text, full: html, text
    added in enw open chrom dnase tracks
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 162, context: html, text, full: html, text
    Added replacement bam files. Redmine #3794.
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    Releasing GENCODE V12 to the RR, redmine# 8137
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlLongRnaSeq.ra
  • lines changed 25659, context: html, text, full: html, text
    Releasing CSHL Long RNA-seq to the RR, redmine# 5698
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGencodeV12.ra
  • lines changed 295, context: html, text, full: html, text
    Releasing GENCODE V12 to the RR, redmine# 8137
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Releasing GENCODE V12 to the RR, redmine# 8137
  • lines changed 2, context: html, text, full: html, text
    Releasing CSHL Long RNA-seq to the RR, redmine# 5698
  • lines changed 2, context: html, text, full: html, text
    removing Gencode V11 from public and beta and leaving it on alpha, redmine #8137
  • lines changed 1, context: html, text, full: html, text
    added in enw open chrom dnase tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release2.html
  • lines changed 1, context: html, text, full: html, text
    fixed link that was pointing to the wrong downloads for CSHL Long RNA-seq, redmine# 5698
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra
  • lines changed 555, context: html, text, full: html, text
    adding in new tracks, and correcting some trackDB errors
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html
  • lines changed 1, context: html, text, full: html, text
    reverted the month back to May. Realized it wasn't based on when we released the track for GENCODE V12, redmine# 8137
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra
  • lines changed 256, context: html, text, full: html, text
    added in new tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.patch.ra
  • lines changed 1847, context: html, text, full: html, text
    removing open chrom dnase patch
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra
  • lines changed 98, context: html, text, full: html, text
    added in enw open chrom dnase tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra
  • lines changed 5396, context: html, text, full: html, text
    starting first version of uw dnase release 6 (data is coming in soon)
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    get rid of two versions of cosmic entry b/c trackVersion for this track is now stored in trackVersion table (#6730)
• src/hg/makeDb/trackDb/mouse/mm8/description.html
  • lines changed 1, context: html, text, full: html, text
    Fixed broken links
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 919, context: html, text, full: html, text
    Add metadata for DeNovo views. Redmine #7089.
  • lines changed 205, context: html, text, full: html, text
    Updated track labels, dccAccessions and html in preperation for final release of data. Redmine #7089.
  • lines changed 35, context: html, text, full: html, text
    Add md5sum's for new files. Redmine #7089.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeFsuRepliChip.ra
  • lines changed 92, context: html, text, full: html, text
    Fixed double compressions and updated md5sum. Redmine #6627.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 22, context: html, text, full: html, text
    add objStatus replaced entry to those stanza/subtracks whose datafile are resubmitted, so user can not download the previous ones which has errors
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
  • lines changed 25, context: html, text, full: html, text
    add objStatus replaced entry to the stanza of those subtracks whose datafile are resubmitted
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeMapability.ra
  • lines changed 16, context: html, text, full: html, text
    corrected mdb erms to be mousey
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) on beta (RM# 829)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeCshlLongRnaSeq.ra
  • lines changed 3249, context: html, text, full: html, text
    staging Cold Springs Harbor Lab RNA-Seq (Release 2) on beta (RM#7089)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeMapability.ra
  • lines changed 106, context: html, text, full: html, text
    Staging metaDB for public for mm9 wgEncodeMapability (Release 1/Final) Redmine#3649
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeSydhRnaSeq.ra
  • lines changed 918, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) on beta (RM# 829)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/#wgEncodeMapability.ra#
  • lines changed 106, context: html, text, full: html, text
    adding -m to lab designating mouse for track Mapability mm9 on public (Final/Release 1) Redmine#3649
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    Staging ENCODE Mapability mm9 (Final/Release 1) on public (RedMine# 3649)
  • lines changed 1, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) Final on public (redmine# 829)
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeMapability.ra
  • lines changed 106, context: html, text, full: html, text
    Staging metaDB for public for mm9 wgEncodeMapability (Release 1/Final) Redmine#3649
  • lines changed 16, context: html, text, full: html, text
    adding -m to lab designating mouse for track Mapability mm9 on public (Final/Release 1) Redmine#3649
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeSydhRnaSeq.ra
  • lines changed 918, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) Final on public (redmine# 829)
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 0, context: html, text, full: html, text
    Correcting spacing issue for code review
  • lines changed 1, context: html, text, full: html, text
    Staging ENCODE Mapability mm9 (Final/Release 1) on public (RedMine# 3649)
  • lines changed 1, context: html, text, full: html, text
    Removed old mapability track
  • lines changed 1, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) on beta (RM# 829)
  • lines changed 1, context: html, text, full: html, text
    Staging Stanford Yale RNA-Seq (Release 1) Final on public (redmine# 829)
  • lines changed 2, context: html, text, full: html, text
    staging Cold Springs Harbor Lab RNA-Seq (Release 2) on beta (RM#7089)
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release2.html
  • lines changed 8, context: html, text, full: html, text
    Updated track labels, dccAccessions and html in preperation for final release of data. Redmine #7089.
  • lines changed 16, context: html, text, full: html, text
    Added in information about the new views. Redmine #7089.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release2.ra
  • lines changed 34, context: html, text, full: html, text
    Updated track labels, dccAccessions and html in preperation for final release of data. Redmine #7089.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeMapability.html
  • lines changed 1, context: html, text, full: html, text
    Changing release notes to July from June for mouse mm9 Mapability (Release 1) RM#3649
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhRnaSeq.html
  • lines changed 4, context: html, text, full: html, text
    incorporate Brian's edit
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhRnaSeq.ra
  • lines changed 9, context: html, text, full: html, text
    add Yale back to label
  • lines changed 1, context: html, text, full: html, text
    wgEncodeSydhRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    change visibility to dense as default display
• src/hg/makeDb/trackDb/tasmanianDevil/sarHar1/gap.html
  • lines changed 39, context: html, text, full: html, text
    Polished gap.html and gold.html
• src/hg/makeDb/trackDb/tasmanianDevil/sarHar1/gold.html
  • lines changed 3, context: html, text, full: html, text
    Polished gap.html and gold.html
• src/hg/near/hgNear/hgNear.c
  • lines changed 4, context: html, text, full: html, text
    Second batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/protein/lib/pbUtil.c
  • lines changed 11, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/protein/pbGlobal/pbGlobal.c
  • lines changed 0, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/protein/pbTracks/pbTracks.c
  • lines changed 0, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/qaPushQ/qaPushQ.c
  • lines changed 18, context: html, text, full: html, text
    making mysql like match on space, the word-boundary in the dbs field so db wont accidentally match another db of which it is a substring
  • lines changed 39, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/sageVisCGI/sageVisCGI.c
  • lines changed 2, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/utils/geoMirrorNode/geoMirrorNode.c
  • lines changed 78, context: html, text, full: html, text
    create geoMirrorNode utility
  • lines changed 16, context: html, text, full: html, text
    support names as well as IPs
• src/hg/utils/geoMirrorNode/makefile
  • lines changed 18, context: html, text, full: html, text
    create geoMirrorNode utility
• src/hg/utils/makeTrackIndex/makeTrackIndex.c
  • lines changed 0, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/utils/makefile
  • lines changed 2, context: html, text, full: html, text
    add geoMirrorNode
• src/hg/utils/tdbQuery/tdbQuery.c
  • lines changed 6, context: html, text, full: html, text
    Third batch of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/hg/visiGene/hgVisiGene/hgVisiGene.c
  • lines changed 2, context: html, text, full: html, text
    First of many checkins as dictated by Jim's OCD. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/inc/cheapcgi.h
  • lines changed 33, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/inc/common.h
  • lines changed 8, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/inc/genoFind.h
  • lines changed 1, context: html, text, full: html, text
    fixing out=sim4 to filter on minIdentity, and to reverse the output order of alignments
• src/inc/linefile.h
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/jkOwnLib/gfOut.c
  • lines changed 28, context: html, text, full: html, text
    fixing out=sim4 to filter on minIdentity, and to reverse the output order of alignments
• src/lib/cheapcgi.c
  • lines changed 96, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/common.c
  • lines changed 9, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/errabort.c
  • lines changed 2, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/htmshell.c
  • lines changed 14, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/linefile.c
  • lines changed 4, context: html, text, full: html, text
    fixing problem truncating bed lists after first element by restoring the comma
• src/lib/ra.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/seqOut.c
  • lines changed 0, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/lib/vcf.c
  • lines changed 13, context: html, text, full: html, text
    Next batch of many checkins as dictated by Jim. Formatting space after if and limiting lines to 100 chars. Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history. None of these changes should affect executables in any way. Only affect is to my sanity and Jim's.
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    adding twoBitDup, a utility to list the sequences in a twoBit that appear more than once (by value, not name).
• src/utils/bedToBigBed/bedToBigBed.c
  • lines changed 1, context: html, text, full: html, text
    fixing problem truncating bed lists after first element by restoring the comma
• src/utils/bedToBigBed/itemRgb.as
  • lines changed 1, context: html, text, full: html, text
    fixing problem truncating bed lists after first element by restoring the comma
• src/utils/bedToBigBed/makefile
  • lines changed 1, context: html, text, full: html, text
    fixing problem truncating bed lists after first element by restoring the comma
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v269 final build

• lines changed: 48354
• files changed: 233