Commits for kent
switch to files view, user index
v289_base to v290_preview (2013-09-09 to 2013-09-16) v290
- Seems to work. Best used with edwTempJob.
- src/hg/encode3/encodeDataWarehouse/edwRunOnIds/edwRunOnIds.c - lines changed 59, context: html, text, full: html, text
- Seems to work. Best used with edwTempJob.
- src/hg/encode3/encodeDataWarehouse/edwRunOnIds/makefile - lines changed 4, context: html, text, full: html, text
- Starting to add test cases.
- src/utils/raToStructGen/test.as - lines changed 33, context: html, text, full: html, text
- Pretty major reworking. Making an enum with symbolic names for the field offsets. Adding computed field option so not all fields need to be addressed by parser. Generating more functions. The code generated passes visual inspection but has not been compiled and tested.
- src/utils/raToStructGen/raToStructGen.c - lines changed 110, context: html, text, full: html, text
- Got output to compile. Added a test script.
- src/utils/raToStructGen/raToStructGen.c - lines changed 44, context: html, text, full: html, text
- src/utils/raToStructGen/testIt - lines changed 6, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/makefile - lines changed 3, context: html, text, full: html, text
- Streamlining unit test.
- src/utils/raToStructGen/test.as - lines changed 33, context: html, text, full: html, text
- src/utils/raToStructGen/testIt - lines changed 8, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/makefile - lines changed 1, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/test.as - lines changed 34, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/test.expected - lines changed 1, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/test.ra - lines changed 27, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/testRaToStruct.c - lines changed 301, context: html, text, full: html, text
- Adding support for arrays, and also extraH option to raToStructGen.
- src/utils/raToStructGen/raToStructGen.c - lines changed 18, context: html, text, full: html, text
- src/utils/raToStructGen/testOut/testRaToStruct.c - lines changed 14, context: html, text, full: html, text
- Adding encode3IsGzip routine to see if a file starts with gzip signature.
- src/hg/inc/encode3/encode3Valid.h - lines changed 3, context: html, text, full: html, text
- src/hg/lib/encode3/encode3Valid.c - lines changed 10, context: html, text, full: html, text
- src/hg/oneShot/freen/freen.c - lines changed 6, context: html, text, full: html, text
- Adding another email for Chin, and also some male & female specific assemblies for mouse and human.
- src/hg/encode3/encodeDataWarehouse/lib/resetEdw - lines changed 9, context: html, text, full: html, text
- Making readSizeMin/Max be integers rather than doubles.
- src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h - lines changed 2, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.as - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c - lines changed 7, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.sql - lines changed 3, context: html, text, full: html, text
- Redoing with improved parser generator.
- src/hg/encode3/encodeDataWarehouse/lib/edwFastqFileFromRa.c - lines changed 142, context: html, text, full: html, text
- Making it so polls for new work every 30 seconds instead of every 60. Removing need for synchronization signals in FIFO to end with new line.
- src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c - lines changed 21, context: html, text, full: html, text
- Improving 'enriched in' display in case where it is not set in manifest.
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c - lines changed 2, context: html, text, full: html, text
- Controlling suffixes better so they come from format where possible, and only a limited number of double suffixes are allowed. Also check that .gz files have gzip signature at beginning.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c - lines changed 19, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 8, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 3, context: html, text, full: html, text
- Adding parallelFetchInterruptable, which has a callback that checks for interrupt.
- First cut at putting in 'stop upload' button.
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 38, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c - lines changed 54, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/inc/edwLib.h - lines changed 3, context: html, text, full: html, text
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 9, context: html, text, full: html, text
- Fixed uninitialized variable warning.
- src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 1, context: html, text, full: html, text
- Coping with new parameter for edwLib routine.
- src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c - lines changed 1, context: html, text, full: html, text
- Adding parallelFetchRemovePartial clean up function.
- Doing clean up of temp files after user stops an upload early.
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 5, context: html, text, full: html, text
switch to files view, user index