All File Changes

v303_base to v304_preview (2014-07-21 to 2014-07-28) v304

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 9, context: html, text, full: html, text
    SNP tracks have an option to include orthologous chimp allele andobserved alleles in the item names. So far, this option has been
    offered only when there is an ortho table for the SNP track, and
    alleles have been included only when a chimp allele is found.
    However, for comparison with other annotations, it is useful to
    see observed alleles even when chimp alleles aren't available.
    Now, if there is no ortho table, the option to include just observed
    alleles is given. If enabled, then when there is no ortho table, or
    no ortho allele for a particular SNP, observed alleles are added to
    the item name.
    
  • lines changed 9, context: html, text, full: html, text
    For SNPs tracks option to append alleles to the rs# ID in the item name, by default show alleles on the + strand of reference.If a user still wants to see alleles on dbSNP's arbitrary and unstable strand, there's a new option to do so.
    refs #13694
    
• src/hg/hgTracks/bamTrack.c
  • lines changed 5, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/bedTrack.c
  • lines changed 2, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/chainTrack.c
  • lines changed 1, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    removing the code that removes udcTimeout from the cart after meetingwith folks here who are concerned this will be too big of a burden to
    hub developers. See #13675 for a discussion of this.
    
• src/hg/hgTracks/hgTracks.h
  • lines changed 6, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/joinedRmskTrack.c
  • lines changed 2, context: html, text, full: html, text
    fixup slAddHead argument reference refs #9741
  • lines changed 3, context: html, text, full: html, text
    correctly using sqlDyStringPrintf refs #9741
  • lines changed 14, context: html, text, full: html, text
    correct formatting on single statement if() statements refs #9741
• src/hg/hgTracks/rnaFoldTrack.c
  • lines changed 4, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 146, context: html, text, full: html, text
    Checking in changes to make 'spectrum' (aka 'useScore') actually work on any pair of color/altColor settings. It used to be that only shadesOfGray, shadesOfBrown and shadesOfSea worked, leaving most cases to be shadesOfGray. I have sat on these changes for months. I am also checking in ifdef'd out code to calc the shade on the fly, rather than relaying on track->colorShades set of precomputed 10 shades. The only reason this code is not used is that it would require changing many many places/uses of colorShades. Since I am bein laid off, it seems inappropriate to make this more dramatic change at this time.
• src/hg/hgTracks/variation.c
  • lines changed 31, context: html, text, full: html, text
    SNP tracks have an option to include orthologous chimp allele andobserved alleles in the item names. So far, this option has been
    offered only when there is an ortho table for the SNP track, and
    alleles have been included only when a chimp allele is found.
    However, for comparison with other annotations, it is useful to
    see observed alleles even when chimp alleles aren't available.
    Now, if there is no ortho table, the option to include just observed
    alleles is given. If enabled, then when there is no ortho table, or
    no ortho allele for a particular SNP, observed alleles are added to
    the item name.
    
  • lines changed 54, context: html, text, full: html, text
    For SNPs tracks option to append alleles to the rs# ID in the item name, by default show alleles on the + strand of reference.If a user still wants to see alleles on dbSNP's arbitrary and unstable strand, there's a new option to do so.
    refs #13694
    
• src/hg/hgc/hgc.c
  • lines changed 4, context: html, text, full: html, text
    completed the joinedRmsk click handling refs #9741
• src/hg/hgc/hgc.h
  • lines changed 3, context: html, text, full: html, text
    completed the joinedRmsk click handling refs #9741
• src/hg/hgc/joinedRmskClick.c
  • lines changed 4, context: html, text, full: html, text
    completed the joinedRmsk click handling refs #9741
  • lines changed 3, context: html, text, full: html, text
    trying 0-relative genoStart on rmskAlignBaseline table refs #9741
  • lines changed 1, context: html, text, full: html, text
    display alignStart 1-relative for users refs #9741
  • lines changed 2, context: html, text, full: html, text
    display genoStart 1-relative for users refs #9741
  • lines changed 0, context: html, text, full: html, text
    correct formatting on single statement if() statements refs #9741
• src/hg/htdocs/ENCODE/aboutScaleup.html
  • lines changed 1, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
  • lines changed 1, context: html, text, full: html, text
    Responses to QA input. refs #13616
• src/hg/htdocs/ENCODE/antibodies.html
  • lines changed 2, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/cellTypes.html
  • lines changed 4, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/cellTypesMouse.html
  • lines changed 3, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/contacts.html
  • lines changed 8, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/contributors.html
  • lines changed 6, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
  • lines changed 1, context: html, text, full: html, text
    Responses to QA input. refs #13616
• src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html
  • lines changed 5, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataSummary.html
  • lines changed 13, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/dataSummaryMouse.html
  • lines changed 13, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/downloadsMouse.html
  • lines changed 3, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/index.html
  • lines changed 4, context: html, text, full: html, text
    Add links to PMIDs in ENCODE news (code review from Angie)
  • lines changed 20, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
  • lines changed 1, context: html, text, full: html, text
    Responses to QA input. refs #13616
  • lines changed 1, context: html, text, full: html, text
    FIxing link
• src/hg/htdocs/ENCODE/newsarch.html
  • lines changed 4, context: html, text, full: html, text
    Updating ENCODE newsarch.html to match Kates CR chagnes to the ENOCDE news index.hml per #13651
• src/hg/htdocs/ENCODE/otherTerms.html
  • lines changed 8, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/releaseLog.html
  • lines changed 1, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/ENCODE/search.html
  • lines changed 8, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/FAQ/FAQdisplay.html
  • lines changed 1, context: html, text, full: html, text
    updating the scheduled maintanence time
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 0, context: html, text, full: html, text
    Fixing minor typo. refs #12843
• src/hg/htdocs/goldenPath/help/hgVaiHelpText.html
  • lines changed 3, context: html, text, full: html, text
    fixing more static links with path errors
• src/hg/htdocs/google/index.html
  • lines changed 14, context: html, text, full: html, text
    no longer useful
• src/hg/htdocs/google/sitemap.xml.gz
  • lines changed 0, context: html, text, full: html, text
    no longer useful
• src/hg/htdocs/images/encodeAtUcsc.png
  • lines changed 0, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/inc/encode.topbar.html
  • lines changed 3, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/inc/encode.topbar_pilot.html
  • lines changed 1, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/inc/encodeProject.topbar.html
  • lines changed 6, context: html, text, full: html, text
    Update ENCODE pages at UCSC to prep for migration of encodeproject.org to Stanford. refs #13616
• src/hg/htdocs/training.html
  • lines changed 1, context: html, text, full: html, text
    fixing more static links with path errors
• src/hg/js/alleles.js
  • lines changed 1, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/js/ddcl.js
  • lines changed 2, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/js/hgTracks.js
  • lines changed 15, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/js/hui.js
  • lines changed 4, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/js/subCfg.js
  • lines changed 4, context: html, text, full: html, text
    Going from fauxVis to the drop-down select in one click really does a number on IE11, causing it to hang. This fix requires IE11 users to perform 2 clicks to set subtrack visibility. Perhaps Angie can find a more graceful solution, but it probably isn't worth the time. Redmine #13678.
• src/hg/js/ui.dropdownchecklist.js
  • lines changed 1, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/js/utils.js
  • lines changed 136, context: html, text, full: html, text
    Fixed many of the problems with IE version 11 going undetected. Redmine #13422.
• src/hg/lib/nestedRepeats.as
  • lines changed 4, context: html, text, full: html, text
    the extra periods on the end of the sentence fragments show up in the hgc click page refs #13578
• src/hg/lib/nestedRepeats.sql
  • lines changed 3, context: html, text, full: html, text
    the extra periods on the end of the sentence fragments show up in the hgc click page refs #13578
• src/hg/lib/rmskAlign.sql
  • lines changed 1, context: html, text, full: html, text
    setup indexes for these new rmsk tables refs #9741
• src/hg/lib/rmskJoined.as
  • lines changed 2, context: html, text, full: html, text
    eliminating the description field and named as rmskJoinedBaseline for table browser recognition in tableDescriptions refs #9741
• src/hg/lib/rmskJoined.c
  • lines changed 2, context: html, text, full: html, text
    temporary avoid description field refs #9741
  • lines changed 5, context: html, text, full: html, text
    eliminating the description field and named as rmskJoinedBaseline for table browser recognition in tableDescriptions refs #9741
• src/hg/lib/rmskJoined.sql
  • lines changed 4, context: html, text, full: html, text
    setup indexes for these new rmsk tables refs #9741
  • lines changed 3, context: html, text, full: html, text
    eliminating the description field and named as rmskJoinedBaseline for table browser recognition in tableDescriptions refs #9741
• src/hg/lib/rmskOut2.sql
  • lines changed 2, context: html, text, full: html, text
    setup indexes for these new rmsk tables refs #9741
• src/hg/lib/trackHubCheck.c
  • lines changed 2, context: html, text, full: html, text
    in hubCheck, don't check for "type" field unless there's a bigDataUrlfield. This prevents errors on view and composite blocks in the
    trackDb.txt files.
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 10, context: html, text, full: html, text
    papAnu2 to hg19 liftOver done refs #13695
  • lines changed 1, context: html, text, full: html, text
    papAnu2 to hg19 liftOver done refs #13695
• src/hg/makeDb/doc/hg38.txt
  • lines changed 27, context: html, text, full: html, text
    adding RepeatMasker Visualization track build procedure refs #9741
• src/hg/makeDb/doc/mm10.txt
  • lines changed 31, context: html, text, full: html, text
    adding RepeatMasker Visualization track build procedure refs #9741
• src/hg/makeDb/doc/papAnu2.txt
  • lines changed 21, context: html, text, full: html, text
    papAnu2 to hg19 liftOver done refs #13695
• src/hg/makeDb/doc/rn5.txt
  • lines changed 13, context: html, text, full: html, text
    lift overs rn5<->rn6 both ways refs #13578
• src/hg/makeDb/doc/rn6.txt
  • lines changed 14, context: html, text, full: html, text
    lift overs rn5<->rn6 both ways refs #13578
• src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes15.csh
  • lines changed 10, context: html, text, full: html, text
    add instructions to build knownToMalacards
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
  • lines changed 2, context: html, text, full: html, text
    more information on the table definition creation refs #9741
• src/hg/makeDb/hgLoadOutJoined/hgLoadOutJoined.c
  • lines changed 395, context: html, text, full: html, text
    loader for new style 'joined' rmsk track refs #9741
  • lines changed 85, context: html, text, full: html, text
    eliminate split options and setup correct default table name
  • lines changed 2, context: html, text, full: html, text
    more info on the bad rep range error message refs #9741
  • lines changed 9, context: html, text, full: html, text
    (parens) do not really mean negative numbers refs #9741
• src/hg/makeDb/hgLoadOutJoined/makefile
  • lines changed 3, context: html, text, full: html, text
    loader for new style 'joined' rmsk track refs #9741
• src/hg/makeDb/makefile
  • lines changed 1, context: html, text, full: html, text
    add hgLoadOutJoined to the utils build refs #9741
• src/hg/makeDb/schema/all.joiner
  • lines changed 5, context: html, text, full: html, text
    adding rules for the rmskJoined tables;
  • lines changed 1, context: html, text, full: html, text
    adding rules for the rmskJoined tables refs #9741;
• src/hg/makeDb/trackDb/cow/bosTau4/description.html
  • lines changed 5, context: html, text, full: html, text
    Changing links on cow (bosTau4) track description pages
• src/hg/makeDb/trackDb/cow/bosTau4/multiz5way.html
  • lines changed 74, context: html, text, full: html, text
    Changing links on cow (bosTau4) track description pages
• src/hg/makeDb/trackDb/cow/bosTau4/nscanGene.html
  • lines changed 42, context: html, text, full: html, text
    Changing links on cow (bosTau4) track description pages
• src/hg/makeDb/trackDb/cow/bosTau4/phastConsElements5way.html
  • lines changed 46, context: html, text, full: html, text
    Changing links on cow (bosTau4) track description pages
• src/hg/makeDb/trackDb/dog/canFam1/bacEndPairs.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam1/mzHg17Mm5_phast.html
  • lines changed 90, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam1/twinscan.html
  • lines changed 6, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam2/bacEndPairs.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam2/description.html
  • lines changed 8, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam2/multiz4way.html
  • lines changed 75, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam2/phastConsElements4way.html
  • lines changed 50, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/dog/canFam2/uncertified.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Finished 26 chain/net tracks for dm6.
• src/hg/makeDb/trackDb/guineaPig/cavPor3/description.html
  • lines changed 5, context: html, text, full: html, text
    changing greater than signs on guinea pig gateway page, refs #13604
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 13, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/snp141.html
  • lines changed 36, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/snp141.shared.html
  • lines changed 467, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/snp141Common.html
  • lines changed 28, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/snp141Flagged.html
  • lines changed 29, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/snp141Mult.html
  • lines changed 25, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 121, context: html, text, full: html, text
    trackDb and friends for snp141* tracks. refs #13309
• src/hg/makeDb/trackDb/lamprey/petMar1/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on lamprey (petMar1) track description pages
• src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html
  • lines changed 75, context: html, text, full: html, text
    Changing links on lamprey (petMar1) track description pages
• src/hg/makeDb/trackDb/lamprey/petMar1/phastConsElements6way.html
  • lines changed 45, context: html, text, full: html, text
    Changing links on lamprey (petMar1) track description pages
• src/hg/makeDb/trackDb/lancelet/braFlo1/multiz5way.html
  • lines changed 74, context: html, text, full: html, text
    Changing links on lancelet (braFlo1) track description pages
• src/hg/makeDb/trackDb/lancelet/braFlo1/phastConsElements5way.html
  • lines changed 46, context: html, text, full: html, text
    Changing links on lancelet (braFlo1) track description pages
• src/hg/makeDb/trackDb/mgcFullMrna.html
  • lines changed 3, context: html, text, full: html, text
    Updating references for MGC Genes track for rn6 assembly, refs #13578
• src/hg/makeDb/trackDb/mouse/FaceBase24SampleTypesAvg.html
  • lines changed 2, context: html, text, full: html, text
    commented out <body> tags to resolve hgTables robot error, refs #13567
• src/hg/makeDb/trackDb/mouse/mm10/knownGeneOld6.html
  • lines changed 1, context: html, text, full: html, text
    Removing unnecessary parameter from old UCSC genes page on mm10
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    different track group for joinedRmsk refs #9741
• src/hg/makeDb/trackDb/rabbit/oryCun2/description.html
  • lines changed 2, context: html, text, full: html, text
    Changing links on rabbit (oryCun2) gateway page
• src/hg/makeDb/trackDb/rat/rn6/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding search rule for gold table refs #13578
• src/hg/makeDb/trackDb/sheep/oviAri1/gold.html
  • lines changed 0, context: html, text, full: html, text
    Removing extra space from oviAri1 link on gold description page
• src/hg/makeDb/trackDb/stickleback/gasAcu1/description.html
  • lines changed 3, context: html, text, full: html, text
    Changing links on stickleback (gasAcu1) track description pages
• src/hg/makeDb/trackDb/stickleback/gasAcu1/multiz8way.html
  • lines changed 81, context: html, text, full: html, text
    Changing links on stickleback (gasAcu1) track description pages
• src/hg/makeDb/trackDb/stickleback/gasAcu1/phastConsElements8way.html
  • lines changed 50, context: html, text, full: html, text
    Changing links on stickleback (gasAcu1) track description pages
• src/hg/makeDb/trackDb/trackDb.chainNet.insects.ra
  • lines changed 1605, context: html, text, full: html, text
    Finished 26 chain/net tracks for dm6.
• src/hg/makeDb/trackDb/trackDb.ra
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    Finished 26 chain/net tracks for dm6.
• src/hg/makeDb/trackDb/wgEncodeNhgriBip.html
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    Changing links on Dog (canFam1 and canFam2) track description pages
• src/hg/makeDb/trackDb/worm/ce6/algBinding.html
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• src/hg/makeDb/trackDb/worm/ce6/description.html
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• src/hg/makeDb/trackDb/xenTro/xenTro2/description.html
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• src/hg/makeDb/trackDb/xenTro/xenTro2/multiz7way.html
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• src/hg/makeDb/trackDb/xenTro/xenTro2/phastConsElements7way.html
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• src/hg/makeDb/trackDb/zebrafish/affyZonWildType.html
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• src/hg/makeDb/trackDb/zebrafish/danRer5/affyConsensusAndTargetZonWildType.html
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• src/hg/makeDb/trackDb/zebrafish/danRer5/affyZebrafish.html
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• src/hg/makeDb/trackDb/zebrafish/danRer5/ctgPos2.html
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• src/hg/makeDb/trackDb/zebrafish/danRer5/rmsk.html
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    Changing links on Zebrafish (danRer5) track description pages
• src/hg/makeDb/trackDb/zebrafish/danRer5/vegaGene.html
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    Changing links on Zebrafish (danRer5) track description pages
• src/hg/makeDb/trackDb/zebrafish/danRer5/vegaPseudoGene.html
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    Changing links on Zebrafish (danRer5) track description pages
• src/utils/qa/weeklybld/buildEnv.csh
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    v304 preview1 refs #13703

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